Jatropha Genome Database

JcCB0031871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031871.20 + phase: 0 /pseudo
         (206 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004616 conserved hypothetical protein                           65   2e-11

>29848.m004616 conserved hypothetical protein
          Length = 180

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 40/56 (71%), Gaps = 3/56 (5%)

Query: 4  LSITDRRYTYIHDCKWPSEAIDVHHIVVRKSKTKSFFVYLSAFVLLPNALCLFLVK 59
          +SI +RRYTYIHDCK PS+AI+ HHI+VRKS+     V L  FVLL N   LFL K
Sbjct: 1  MSIANRRYTYIHDCKLPSKAINTHHIIVRKSRR---IVCLLGFVLLTNTSFLFLFK 53