Jatropha Genome Database

JcCB0031871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031871.10 - phase: 0 /partial
         (80 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004615 UDP-sugar transporter, putative                         104   7e-24
29927.m000597 conserved hypothetical protein                           69   4e-13

>29848.m004615 UDP-sugar transporter, putative
          Length = 356

 Score =  104 bits (260), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 64/79 (81%), Gaps = 2/79 (2%)

Query: 1  MASNSSNNPILPVXXXXXXXXXXXXRLIKGGDEKLFRGSAMTKRGAYAAISYMSCAVLLV 60
          MASNSSNN ILP+            RLIKG D+K+FRGSAMTKRGAYAAISYMSCAVLLV
Sbjct: 1  MASNSSNNSILPLSTSPSDDKEKE-RLIKG-DDKIFRGSAMTKRGAYAAISYMSCAVLLV 58

Query: 61 MFNKAALSSYKFPSANVMS 79
          +FNKAALSS+ FPSANV++
Sbjct: 59 IFNKAALSSFNFPSANVIT 77


>29927.m000597 conserved hypothetical protein
          Length = 163

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 41/53 (77%)

Query: 27 LIKGGDEKLFRGSAMTKRGAYAAISYMSCAVLLVMFNKAALSSYKFPSANVMS 79
          L+   +EK    S MTKRGAYAAISYM+ AVLLVMFNKAALSSY F  ANV++
Sbjct: 9  LLPVTEEKQKNDSVMTKRGAYAAISYMASAVLLVMFNKAALSSYSFQYANVIT 61