Jatropha Genome Database

JcCB0031431.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031431.20 - phase: 0 
         (110 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29629.m001436 RALFL33, putative                                       153   2e-38
30128.m008822 RALFL33, putative                                        88   1e-18
30129.m000368 RALFL33, putative                                        85   8e-18
29726.m004038 RALFL33, putative                                        82   3e-17
29668.m000326 RALFL33, putative                                        62   4e-11
30157.m000792 RALFL33, putative                                        49   6e-07
31648.m000015 RALFL33, putative                                        49   7e-07
30115.m001221 RALFL33, putative                                        48   1e-06

>29629.m001436 RALFL33, putative
          Length = 114

 Score =  153 bits (386), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 83/99 (83%), Gaps = 10/99 (10%)

Query: 18  FAICNGVSVSGLNSLENTEIDAVMRRV------DWLEEAEMESEISRRVLLMQK-YISYE 70
           F ICNGVSVSG    +NTE+DA+MRRV      D  EE EMESEISRRVL+MQK YISYE
Sbjct: 18  FTICNGVSVSGF---KNTEVDAIMRRVCTKKIGDCFEEPEMESEISRRVLVMQKKYISYE 74

Query: 71  TLKRDMVPCAKPGASYYDCHAGEANPYSRGCEVITRCRG 109
           TLKRDMVPC KPGASYYDCHAGEANPYSRGCE+ITRCRG
Sbjct: 75  TLKRDMVPCDKPGASYYDCHAGEANPYSRGCEMITRCRG 113


>30128.m008822 RALFL33, putative
          Length = 121

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 48  EEAEMESEISRRVLLMQKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITR 106
           EE EM+SE SRR+L   KYISY  L+R+ VPC++ GASYY+C  G +ANPYSRGC  ITR
Sbjct: 59  EEFEMDSETSRRILATTKYISYGALQRNSVPCSRRGASYYNCQPGAQANPYSRGCSTITR 118

Query: 107 CR 108
           CR
Sbjct: 119 CR 120


>30129.m000368 RALFL33, putative
          Length = 116

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 48  EEAEMESEISRRVLLMQKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITR 106
           +E +M+SEI+RR+L    YISY  L+R+ +PC++ GASYY+C  G EANPYSRGC  ITR
Sbjct: 54  DEFDMDSEINRRILATTNYISYGALQRNTIPCSQRGASYYNCQPGAEANPYSRGCSAITR 113

Query: 107 CRG 109
           CR 
Sbjct: 114 CRS 116


>29726.m004038 RALFL33, putative
          Length = 117

 Score = 82.4 bits (202), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 53/72 (73%), Gaps = 2/72 (2%)

Query: 38  DAVMRRVDWLEEAEMESEISRRVLLMQKYISYETLKRDMVPCAKPGASYYDCHAG-EANP 96
           + +M   D LE A M++EI+RR+L   KYISY  L+R+ VPC++ GASYY+C  G +ANP
Sbjct: 46  ECLMSGEDDLEFA-MDTEINRRILATNKYISYGALRRNTVPCSRRGASYYNCRPGAQANP 104

Query: 97  YSRGCEVITRCR 108
           YSRGC  ITRCR
Sbjct: 105 YSRGCNRITRCR 116


>29668.m000326 RALFL33, putative
          Length = 112

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 48  EEAEMESEISRRVLLM-QKYISYETLKRDMVPCAKPGASYYDCHA---GEANPYSRGCEV 103
           EE  ++SE SRRVL   ++Y+SY  LK +M PC K G SYY C      + NPY R C V
Sbjct: 41  EEVMLDSEASRRVLASGKRYLSYAALKANMTPCMKRGRSYYYCKQLARKKVNPYKRACTV 100

Query: 104 ITRC 107
           IT+C
Sbjct: 101 ITKC 104


>30157.m000792 RALFL33, putative
          Length = 122

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 5/80 (6%)

Query: 34  NTEIDAVMRRVDWLEEAE--MESEISRRVLLMQKYISYETLKRDMVPC--AKPGASYY-D 88
           NT+  A M      +E E  MESE S+R+LL  K+IS  TL+R++  C  A+ G  Y   
Sbjct: 41  NTQCSATMAERSDTDEEELLMESETSQRLLLGGKFISPGTLRRNIPACGNAERGDPYSAT 100

Query: 89  CHAGEANPYSRGCEVITRCR 108
           C    +NPY+RGC    +CR
Sbjct: 101 CLPPPSNPYNRGCLRYYKCR 120


>31648.m000015 RALFL33, putative
          Length = 91

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 47  LEEAEMESEISRRVLLMQKYISYETLKRDMVPC--AKPGASY-YDCHAGEANPYSRGCEV 103
           L E  MESEISRR L  +KYIS   LKRD   C     G SY   C    +NP++RGC  
Sbjct: 24  LYEMLMESEISRRFLAEKKYISPGALKRDQPVCNGGANGQSYSSSCLPPSSNPHTRGCSK 83

Query: 104 ITRCR 108
             +CR
Sbjct: 84  YYQCR 88


>30115.m001221 RALFL33, putative
          Length = 128

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 10/70 (14%)

Query: 47  LEEAEMESEISRRVLLMQK---YISYETLKRDMVPCA-KPGASYY--DCHAGEA--NPYS 98
           +++ EM +E  RR L  ++   YISY  L  + +PC  + G SYY  +C    A  NPY+
Sbjct: 60  IDDGEMGTE--RRSLFWRRVHYYISYGALSANRIPCPPRSGRSYYTHNCFHSRAPVNPYT 117

Query: 99  RGCEVITRCR 108
           RGC  ITRCR
Sbjct: 118 RGCSRITRCR 127