Jatropha Genome Database

JcCB0031431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031431.10 - phase: 0 
         (117 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29629.m001436 RALFL33, putative                                       172   3e-44
30129.m000368 RALFL33, putative                                        87   1e-18
30128.m008822 RALFL33, putative                                        86   3e-18
29726.m004038 RALFL33, putative                                        79   4e-16
29668.m000326 RALFL33, putative                                        68   1e-12
31648.m000015 RALFL33, putative                                        49   6e-07
30115.m001221 RALFL33, putative                                        47   2e-06

>29629.m001436 RALFL33, putative
          Length = 114

 Score =  172 bits (436), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 99/116 (85%), Gaps = 3/116 (2%)

Query: 1   MSRPKLYILALIFLYTHFSICNGVSVSGLNSLEITEIDAIVSRPCTRKIGDCLEEAEMES 60
           M RP   +LA + L+T F+ICNGVSVSG  +   TE+DAI+ R CT+KIGDC EE EMES
Sbjct: 1   MLRPTFCLLAFLLLHTLFTICNGVSVSGFKN---TEVDAIMRRVCTKKIGDCFEEPEMES 57

Query: 61  EISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHAGEANPYSRGCEVITRCRG 116
           EISRRVL+MQKKYISYETLKRDMVPC KPGASYYDCHAGEANPYSRGCE+ITRCRG
Sbjct: 58  EISRRVLVMQKKYISYETLKRDMVPCDKPGASYYDCHAGEANPYSRGCEMITRCRG 113


>30129.m000368 RALFL33, putative
          Length = 116

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 9/112 (8%)

Query: 12  IFLYTHFSICNGVSVSGLNSLEITEIDAIVSRP----CTRKIGDCLEEAE--MESEISRR 65
           IFL+T + + + + +S  +++E T    +   P    C   + DC++E E  M+SEI+RR
Sbjct: 7   IFLFTFYLLLSSLIIS-TSTVEATIDHKLNWVPKTSRCQGTLADCMQEDEFDMDSEINRR 65

Query: 66  VLLMQKKYISYETLKRDMVPCAKPGASYYDCHAG-EANPYSRGCEVITRCRG 116
           +L     YISY  L+R+ +PC++ GASYY+C  G EANPYSRGC  ITRCR 
Sbjct: 66  IL-ATTNYISYGALQRNTIPCSQRGASYYNCQPGAEANPYSRGCSAITRCRS 116


>30128.m008822 RALFL33, putative
          Length = 121

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 54/79 (68%), Gaps = 6/79 (7%)

Query: 42  SRPCTRKIGDCL----EEAEMESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCH 97
           S  C   I +CL    EE EM+SE SRR+L    KYISY  L+R+ VPC++ GASYY+C 
Sbjct: 43  SSTCKGSIAECLASNGEEFEMDSETSRRIL-ATTKYISYGALQRNSVPCSRRGASYYNCQ 101

Query: 98  AG-EANPYSRGCEVITRCR 115
            G +ANPYSRGC  ITRCR
Sbjct: 102 PGAQANPYSRGCSTITRCR 120


>29726.m004038 RALFL33, putative
          Length = 117

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 52/78 (66%), Gaps = 8/78 (10%)

Query: 45  CTRKIGDCLEEAE------MESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHA 98
           C   I +CL   E      M++EI+RR+L    KYISY  L+R+ VPC++ GASYY+C  
Sbjct: 40  CRGSIAECLMSGEDDLEFAMDTEINRRIL-ATNKYISYGALRRNTVPCSRRGASYYNCRP 98

Query: 99  G-EANPYSRGCEVITRCR 115
           G +ANPYSRGC  ITRCR
Sbjct: 99  GAQANPYSRGCNRITRCR 116


>29668.m000326 RALFL33, putative
          Length = 112

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 5/73 (6%)

Query: 47  RKIGDCL--EEAEMESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHA---GEA 101
           R +GD +  EE  ++SE SRRVL   K+Y+SY  LK +M PC K G SYY C      + 
Sbjct: 32  RLVGDEVGEEEVMLDSEASRRVLASGKRYLSYAALKANMTPCMKRGRSYYYCKQLARKKV 91

Query: 102 NPYSRGCEVITRC 114
           NPY R C VIT+C
Sbjct: 92  NPYKRACTVITKC 104


>31648.m000015 RALFL33, putative
          Length = 91

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 45  CTRKIGDCLEEAE---MESEISRRVLLMQKKYISYETLKRDMVPC--AKPGASY-YDCHA 98
           C   I +C EE     MESEISRR  L +KKYIS   LKRD   C     G SY   C  
Sbjct: 13  CNGSIAECNEELYEMLMESEISRR-FLAEKKYISPGALKRDQPVCNGGANGQSYSSSCLP 71

Query: 99  GEANPYSRGCEVITRCR 115
             +NP++RGC    +CR
Sbjct: 72  PSSNPHTRGCSKYYQCR 88


>30115.m001221 RALFL33, putative
          Length = 128

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 9/70 (12%)

Query: 53  LEEAEMESEISRRVLLMQK--KYISYETLKRDMVPCA-KPGASYY--DCHAGEA--NPYS 105
           +++ EM +E  RR L  ++   YISY  L  + +PC  + G SYY  +C    A  NPY+
Sbjct: 60  IDDGEMGTE--RRSLFWRRVHYYISYGALSANRIPCPPRSGRSYYTHNCFHSRAPVNPYT 117

Query: 106 RGCEVITRCR 115
           RGC  ITRCR
Sbjct: 118 RGCSRITRCR 127