Jatropha Genome Database
- JcCB0030731.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0030731.10 + phase: 0
(408 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29866.m000621 conserved hypothetical protein 481 e-136
30076.m004450 sensory transduction histidine kinase, putative 225 4e-59
30130.m000280 sensory transduction histidine kinase, putative 158 5e-39
29805.m001503 sensory transduction histidine kinase, putative 147 1e-35
29758.m000642 Two-component response regulator ARR2, putative 116 2e-26
30138.m004044 sensory transduction histidine kinase, putative 100 1e-21
29737.m001227 two-component system sensor histidine kinase/respo... 92 6e-19
29848.m004559 two-component system sensor histidine kinase/respo... 90 2e-18
29929.m004752 two-component sensor histidine kinase bacteria, pu... 90 2e-18
30174.m008957 sensor histidine kinase, putative 87 1e-17
27647.m000179 two-component sensor histidine kinase bacteria, pu... 86 4e-17
29986.m001672 two-component sensor histidine kinase bacteria, pu... 81 1e-15
29889.m003245 sensor histidine kinase, putative 79 3e-15
30147.m014309 two-component system sensor histidine kinase/respo... 77 2e-14
29929.m004754 two-component sensor histidine kinase bacteria, pu... 72 4e-13
29910.m000941 receptor histidine kinase, putative 69 5e-12
29736.m002100 two-component sensor protein histidine protein kin... 68 6e-12
28094.m000169 two-component system sensor histidine kinase/respo... 66 3e-11
30147.m014021 two-component sensor protein histidine protein kin... 64 1e-10
29729.m002374 two-component system sensor histidine kinase/respo... 60 1e-09
30131.m007200 Two-component response regulator ARR8, putative 58 9e-09
29929.m004753 Two-component response regulator ARR14, putative 57 1e-08
30054.m000786 transcription factor, putative 53 3e-07
27983.m000077 two-component system sensor histidine kinase/respo... 50 2e-06
>29866.m000621 conserved hypothetical protein
Length = 667
Score = 481 bits (1237), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/368 (67%), Positives = 283/368 (76%), Gaps = 25/368 (6%)
Query: 51 MAVKWSKLFPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKI 110
M ++W KL PRMVLRVLLVEADDSTRQIIAALLRKCSYKV AVPDGLKAWEML+G+PH I
Sbjct: 31 MVMRWEKLLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEMLKGKPHNI 90
Query: 111 DLILTEVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYK 170
DLILTEV+LPSISGYALL+LI EHEICKNIPVI+ MSSQD+ +TVYK
Sbjct: 91 DLILTEVELPSISGYALLTLIMEHEICKNIPVIM--------------MSSQDSVSTVYK 136
Query: 171 CMLRGAADYLVKPIRKNELRNLWQH------SLAEVDGLQDESVGQDKVEATSENNAASN 224
CM+RGAADYLVKPIRKNELRNLWQH SLA + Q+ESVGQD EATSENN SN
Sbjct: 137 CMMRGAADYLVKPIRKNELRNLWQHVWRRQSSLARENCPQEESVGQDTAEATSENNPESN 196
Query: 225 HSSGNMACIQQNKEFIEKGSDAQSSCTKPDAEAESAHMENKRDLL---WGNFFLNGIKMQ 281
HSSG++A +Q NK+F EKGSD+QSSCTKPD EAESA + N R++ WG F LN
Sbjct: 197 HSSGDVARLQNNKDF-EKGSDSQSSCTKPDLEAESAAVGNVREIFLPVWGPFILNDKTRH 255
Query: 282 KHEAITNYGQKLVMHENQAGGSGVAACKDSNRMTVHEDIEPESQRMNANDIHEAYDNNHV 341
K EA + GQK+++HEN AGGS VAACKDSN+M V+ED+EPESQR NA +EA D+N+
Sbjct: 256 KDEARMDCGQKVLLHENDAGGSAVAACKDSNQMIVNEDVEPESQRTNAKITYEACDHNYF 315
Query: 342 HVNFSREAIDFMGTSASHNSS-DNVKSKFDISSHLDLCLTGHNPSGFEIQHPEERCTLRI 400
VN S+EAIDFMG SA H SS DN KSKFD LDLCLT + SGFEIQ E+ TLR
Sbjct: 316 FVNSSKEAIDFMGASAGHKSSLDNTKSKFDFVPQLDLCLTRRHSSGFEIQVLEDTRTLRH 375
Query: 401 SNASAFTR 408
S+ASAFTR
Sbjct: 376 SHASAFTR 383
>30076.m004450 sensory transduction histidine kinase, putative
Length = 697
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 162/412 (39%), Positives = 221/412 (53%), Gaps = 71/412 (17%)
Query: 36 IGKKRKEVNGSLRNGMAVKWSKLFPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPD 95
+ K+R++ GS V+W K P MVLRVLLVEAD STRQII+ALLRKCSY+V AVPD
Sbjct: 16 VDKEREKKEGS---SEVVRWEKFLPNMVLRVLLVEADYSTRQIISALLRKCSYRVAAVPD 72
Query: 96 GLKAWEMLRGRPHKIDLILTEVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGD 155
GL AWE L+ P+ IDLILTEVDLP ISGYALL+L+ EH+ CKNIPVI+
Sbjct: 73 GLMAWETLKDGPNNIDLILTEVDLPLISGYALLTLVMEHDFCKNIPVIM----------- 121
Query: 156 CAVMSSQDATNTVYKCMLRGAADYLVKPIRKNELRNLWQH-----SLAEVDGLQDESVGQ 210
MSS D+ + V KCML+GAAD+L+KP+R+NEL+NLWQH +L + + Q
Sbjct: 122 ---MSSHDSISKVLKCMLKGAADFLIKPVRRNELKNLWQHVWRRQTLTAGNIPPNSPNAQ 178
Query: 211 DKVEATSENN------AASNHSSGNMACIQQNKEFIEKGSDAQSSCTKPDAEAESAHMEN 264
+VEA S + A S+H + KE KGSDAQ S K + + ++ME
Sbjct: 179 HRVEAASSASDHSSDCATSSH---------KRKECSNKGSDAQGSQPKCRSSSNLSNMEK 229
Query: 265 KRDLLWGNFFLN---GIKMQKHEA-----------ITNYGQKLVMHE---NQAGGSGVAA 307
+ L+ + L+ I K A +T + +L + N+A V
Sbjct: 230 E---LYEDVTLDKKSAIPESKTGASLSNRVSQMVYVTEWSTRLQPVDATCNEAHNPTVLK 286
Query: 308 CKDSNRMT----VHEDIEPESQRMNANDIHEAYDNNHVHVNFSREAIDFMGT-------S 356
++ + T E +PE+ R NA+ +N H+ S ID +GT +
Sbjct: 287 LEEEHDFTKINIQDERAQPENDRSNASTTQL---HNDKHIRSSAGVIDLIGTFDNGPKRT 343
Query: 357 ASHNSSDNVKSKFDISSHLDLCLTGHNPSGFEIQHPEERCTLRISNASAFTR 408
S ++ +K + S L+L L P+ + Q EER L SNASAF+R
Sbjct: 344 CGDISINDSANKSEFPSQLELSLRRFFPNSLKNQVVEERRALNHSNASAFSR 395
>30130.m000280 sensory transduction histidine kinase, putative
Length = 807
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 124/217 (57%), Gaps = 24/217 (11%)
Query: 53 VKWSKLFPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDL 112
++W + P L+VLLVE DDSTR +++ALLR CSY+V AV +G +AW++L + DL
Sbjct: 63 IRWERFLPVRSLKVLLVENDDSTRHVVSALLRNCSYEVNAVANGFQAWKILEDMNNHTDL 122
Query: 113 ILTEVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCM 172
+LTEV +P +SG LL I H+ +NIPVI+ MSS D+ V+KC+
Sbjct: 123 VLTEVVMPILSGIGLLCKIRNHKTLRNIPVIM--------------MSSHDSMGIVFKCL 168
Query: 173 LRGAADYLVKPIRKNELRNLWQH---------SLAEVDGLQDESVGQDKVEATSENNAAS 223
+GA D+LVKPIRKNEL+NLWQH G Q + + K SENN+ S
Sbjct: 169 SKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTKKSAKTKSNEESENNSDS 228
Query: 224 NHSSGNMAC-IQQNKEFIEKGSDAQSSCTKPDAEAES 259
+ G+ N++ + GS QSS TK A+ +S
Sbjct: 229 SDELGDYGSNGPSNRDGSDNGSGTQSSWTKRAADIDS 265
>29805.m001503 sensory transduction histidine kinase, putative
Length = 762
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 93/146 (63%), Gaps = 14/146 (9%)
Query: 50 GMAVKWSKLFPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHK 109
G V W + L+VLLVE D STR ++ ALLR CSY+V+ +GL+AW +L ++
Sbjct: 74 GATVCWERFLHLGSLKVLLVENDYSTRHVVTALLRNCSYEVIEATNGLQAWRILEDLTNQ 133
Query: 110 IDLILTEVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVY 169
IDL+LTEV +P +SG LL I H+ KN+PVI+ MSS D+ V+
Sbjct: 134 IDLVLTEVVMPCLSGIGLLYKIMSHKTRKNVPVIM--------------MSSHDSMGLVF 179
Query: 170 KCMLRGAADYLVKPIRKNELRNLWQH 195
KC+ +GA D+LVKPIRKNEL+NLWQH
Sbjct: 180 KCLSKGAVDFLVKPIRKNELKNLWQH 205
>29758.m000642 Two-component response regulator ARR2, putative
Length = 659
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 95/179 (53%), Gaps = 20/179 (11%)
Query: 90 VVAVPDGLKAWEMLRGRPHKIDLILTEVDLPSISGYALLSLITEHEICKNIPVIIVSKFK 149
V AV +GL+AW++L + IDLIL+EV +P +SG LL I H CKNIPVI+
Sbjct: 3 VTAVANGLQAWKLLEDLTNHIDLILSEVAMPCLSGIGLLCKIMNHRTCKNIPVIM----- 57
Query: 150 SIAFGDCAVMSSQDATNTVYKCMLRGAADYLVKPIRKNELRNLWQ------HSLAEVDGL 203
MSS D+ N V+KC+ +GA D+LVKPIRKNEL+NLWQ HS +
Sbjct: 58 ---------MSSHDSMNVVFKCLSKGALDFLVKPIRKNELKNLWQHVWRKCHSSSGSGSE 108
Query: 204 QDESVGQDKVEATSENNAASNHSSGNMACIQQNKEFIEKGSDAQSSCTKPDAEAESAHM 262
D + S+NN SN + ++ + GS QSS TK E +S +
Sbjct: 109 SDIRTRKSTSPEESDNNTGSNDEDDIGSTGLNARDGSDHGSGTQSSWTKRAIEVDSPKL 167
>30138.m004044 sensory transduction histidine kinase, putative
Length = 550
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 14/138 (10%)
Query: 58 LFPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTEV 117
L R +R+LL + D + + + LL KCSY+V +V + + L ID+IL+EV
Sbjct: 16 LIDRSKVRILLCDNDSKSSEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPDIDIILSEV 75
Query: 118 DLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAA 177
DLP G +L IT + + IPVI+ MS+QD + V KC+ GAA
Sbjct: 76 DLPMNKGMKMLKYITRDKELRRIPVIM--------------MSAQDEVSIVVKCLRLGAA 121
Query: 178 DYLVKPIRKNELRNLWQH 195
DYLVKP+R NEL NLW H
Sbjct: 122 DYLVKPLRTNELLNLWTH 139
>29737.m001227 two-component system sensor histidine kinase/response
regulator, putative
Length = 676
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 18/137 (13%)
Query: 59 FPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTEVD 118
FP + +RVL V+ D +++ LL+KC Y+V ++A +MLR +K DL++++V+
Sbjct: 14 FP-VGMRVLAVDDDPICLKVLDTLLKKCQYQVTTTNQAIQALKMLRENRNKYDLVISDVN 72
Query: 119 LPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAAD 178
+P + G+ LL L+ + ++PVI++S A D + VYK + GA D
Sbjct: 73 MPDMDGFKLLELVG---LEMDLPVIMLS-----AHSDKEL---------VYKGVTHGAVD 115
Query: 179 YLVKPIRKNELRNLWQH 195
YL+KP+R EL+N+WQH
Sbjct: 116 YLLKPVRIEELKNIWQH 132
>29848.m004559 two-component system sensor histidine kinase/response
regulator, putative
Length = 663
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 18/137 (13%)
Query: 59 FPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTEVD 118
FP + +RVL V+ D + ++ LR+C Y V + A +MLR +K DL++++V
Sbjct: 14 FP-IGMRVLAVDDDPTCLLVLETFLRRCQYHVTTTSQAISALKMLRENKNKFDLVISDVH 72
Query: 119 LPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAAD 178
+P + G+ LL L+ + ++PVI++S A+ D + V K + GA D
Sbjct: 73 MPDMDGFKLLELVG---LEMDLPVIMLS-----AYSDPKL---------VMKGITHGACD 115
Query: 179 YLVKPIRKNELRNLWQH 195
YL+KP+R EL+N+WQH
Sbjct: 116 YLLKPVRIEELKNIWQH 132
>29929.m004752 two-component sensor histidine kinase bacteria,
putative
Length = 584
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 123/271 (45%), Gaps = 38/271 (14%)
Query: 47 LRNGMAVKWSKLFPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGR 106
+ NG + S FP LRVL+V+ D + +I+ +L+KCSY+V A +LR R
Sbjct: 1 MENGFSSPRSDAFP-AGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLARDALYLLRER 59
Query: 107 PHKIDLILTEVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATN 166
D+++++V++P + G+ LL + + ++PVI+ MS T+
Sbjct: 60 KDGYDIVISDVNMPDMDGFKLLEHVG---LEMDLPVIM--------------MSVDGETS 102
Query: 167 TVYKCMLRGAADYLVKPIRKNELRNLWQHSL-AEVDGLQDESVGQDKVEATSENNAASNH 225
V K + GA DYL+KPIR ELRN+WQH ++ ++D + + +E+ S+H
Sbjct: 103 RVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIEI-LEGMESIQMARIGSDH 161
Query: 226 SSGNMACIQQNKEFIEKGSDAQSSCTKPDAEAESAHMENKRDLLWGNFFLNGIKMQKHEA 285
S ++ ++K D ++ D E+ + K ++W
Sbjct: 162 SDDGYLFCGEDLTSVKKRKDIENKHDDKDGESSTT---KKARVVWS-------------- 204
Query: 286 ITNYGQKLVMHENQAGGSGVAACKDSNRMTV 316
+ QK V NQ G V K + M V
Sbjct: 205 -VDLHQKFVKAVNQIGPDKVGPKKILDLMNV 234
>30174.m008957 sensor histidine kinase, putative
Length = 437
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 24/241 (9%)
Query: 66 VLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTEVDLPSISGY 125
+L+V+ D + I++ +L YKV+ A +LR R +++DLILTEV LP + Y
Sbjct: 21 ILVVDCDSACLAIVSKMLYISGYKVITAKRATDALHILRERQYELDLILTEVHLPDMDKY 80
Query: 126 ALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAADYLVKPIR 185
LL + E +P++I +S+ D N + C+ +GA YL+KPI
Sbjct: 81 ELLETMAE---VSCLPIVI--------------LSADDDENAMLGCLFKGAVFYLLKPIT 123
Query: 186 KNELRNLWQHSLAEVDGLQDESVGQDKVEATSENNAASNHSSGNMACIQQNKEFIEKGSD 245
N++++LWQ S + + G S ASN +S ++ + +++ +K
Sbjct: 124 MNDVKSLWQFSCVKNRKNNVATEGSHSYHGHSTPEIASNEASECLSVLDTSQQNAQKSEG 183
Query: 246 AQSSCTKPDAEAE-SAHMENKRDLLWGN----FFLNGIKMQKHEAITNYGQKLVMHENQA 300
+ D EA ++ K L+W N FL I++ ++ + +K++ H N
Sbjct: 184 KELQEMDKDEEATVTSTFPKKPKLIWTNELHDRFLQAIRILGIDSA--HPKKILKHMNVP 241
Query: 301 G 301
G
Sbjct: 242 G 242
>27647.m000179 two-component sensor histidine kinase bacteria,
putative
Length = 669
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 20/153 (13%)
Query: 44 NGSLRNGMAVKWSKLFPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEML 103
NG + V S FP LRVL+V+ D + +I+ +LR+C Y V A +L
Sbjct: 24 NGVVTATADVAVSDQFPAG-LRVLVVDDDTTCLRILEQMLRRCLYHVTTCSQAKVALNLL 82
Query: 104 RGRPHKIDLILTEVDLPSISGYALLSLITEH-EICKNIPVIIVSKFKSIAFGDCAVMSSQ 162
R R D++L++V +P + G+ LL EH + ++PVI+ MS+
Sbjct: 83 RERKGCFDVVLSDVHMPDMDGFKLL----EHVGLEMDLPVIM--------------MSAD 124
Query: 163 DATNTVYKCMLRGAADYLVKPIRKNELRNLWQH 195
T+ V + + GA DYL+KPIR+ EL+N+WQH
Sbjct: 125 GRTSAVMRGIRHGACDYLIKPIREEELKNIWQH 157
>29986.m001672 two-component sensor histidine kinase bacteria,
putative
Length = 473
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 64 LRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTEVDLPSIS 123
LRVL+V+ D + I+ +LR C YKV A MLR +K D+++ ++ +P +
Sbjct: 35 LRVLVVDDDRTCLLILEKMLRNCLYKVTKCRKAKDALSMLREDKNKFDIVVIDLHMPDMD 94
Query: 124 GYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAADYLVKP 183
G+ LL I E E+ +PV++ MSS D + K +L GA DYL+KP
Sbjct: 95 GFELLE-IAEFEM--GLPVVM--------------MSSDDDHEVIKKGVLHGACDYLIKP 137
Query: 184 IRKNELRNLWQH-----------SLAEVDGLQDESVGQDKVEATSENNAASNHSSGNMAC 232
+R L+ +WQH L ++ GL+D+ + K ++ ++ N ++ +
Sbjct: 138 VRMEALKMIWQHVIRKKKNTAKDELEQLIGLEDDILLLTKPDS-DDDMIHGNLNNTRNSK 196
Query: 233 IQQNKEFIEKGSDAQSSCTKPDAEAESAH 261
++N E+ ++ SD ++ K E H
Sbjct: 197 RRRNNEYDDEPSDPAATGKKRMIWTEELH 225
>29889.m003245 sensor histidine kinase, putative
Length = 682
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 17/132 (12%)
Query: 64 LRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTEVDLPSIS 123
LRVL+V+ D + I+ +LR C Y+V A +LR + D+++++V +P +
Sbjct: 33 LRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGYDIVISDVHMPDMD 92
Query: 124 GYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAADYLVKP 183
G+ LL I + ++PVI+ MS+ +A + V K + GA DYL+KP
Sbjct: 93 GFKLLEHIG---LEMDLPVIM--------------MSADEAKSVVMKGVTHGACDYLIKP 135
Query: 184 IRKNELRNLWQH 195
+R L+N+WQH
Sbjct: 136 VRIEALKNIWQH 147
>30147.m014309 two-component system sensor histidine kinase/response
regulator, putative
Length = 754
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 17/141 (12%)
Query: 62 MVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTEVDLPS 121
+ +++L+V+ D T I++++L+ CS +VV V + L A L+ DL++T++ +P
Sbjct: 19 LTVQILIVDDDAPTLGIVSSMLKTCSLQVVTVKNPLDALSSLQSSDGAFDLVITDLHMPG 78
Query: 122 ISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAADYLV 181
++G L I E IPV+I MSS + + + + GA Y+V
Sbjct: 79 MNGIQLQKQIDEE---FKIPVVI--------------MSSDGKRSAILESLESGAVYYMV 121
Query: 182 KPIRKNELRNLWQHSLAEVDG 202
KP+ +L+N+WQ+++A G
Sbjct: 122 KPVNLRDLKNVWQYAMASKKG 142
>29929.m004754 two-component sensor histidine kinase bacteria,
putative
Length = 419
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 22/134 (16%)
Query: 64 LRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTEVDLPSIS 123
LRVL+V+ D + +I+ +L+KCSY+V A A MLRGR + D+++ +V +
Sbjct: 18 LRVLVVDNDPTWSRILEKMLKKCSYQV-ATCGSRDALNMLRGRKDEYDIVICDVTTSDMD 76
Query: 124 GYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVY--KCMLRGAADYLV 181
G+ LL EH K DC V+++ K + GA DYL+
Sbjct: 77 GFRLL----EHIGLKM---------------DCPVINASALXXASALQKGVRHGACDYLL 117
Query: 182 KPIRKNELRNLWQH 195
KPIR ELRN+WQH
Sbjct: 118 KPIRMKELRNIWQH 131
>29910.m000941 receptor histidine kinase, putative
Length = 185
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 24/131 (18%)
Query: 76 RQIIAALLRKCSYKVVAVPDGLKAWEML----------RGRPHKIDLILTEVDLPSISGY 125
R+I+ LL+ S+KV +V +G KA E+L KID+ILT+ +P ++GY
Sbjct: 31 RKIVEKLLKNASFKVTSVDNGKKAMEILGLSQDKVDKSTYNDQKIDIILTDYCMPEMNGY 90
Query: 126 ALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAADYLVKPIR 185
LL + H K+IPV+I+ SS+ + +C+ GA D+L KP++
Sbjct: 91 DLLMAVKGHSNVKSIPVVII--------------SSEYDPQRISRCLANGAEDFLQKPLQ 136
Query: 186 KNELRNLWQHS 196
+ +L+ L ++
Sbjct: 137 QKDLQKLRSYA 147
>29736.m002100 two-component sensor protein histidine protein
kinase, putative
Length = 258
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 35/174 (20%)
Query: 66 VLLVEADDST--RQIIAALLRKCSYKVVAVPDGLKAWEML--------RGRPHKIDLILT 115
V ++ DDS R++I LL+ S KV AV G +A + L + K+DLI+T
Sbjct: 29 VHVLAVDDSLVDRKVIERLLKITSCKVTAVDSGRRALQFLGLDEEKSTSIQGLKVDLIIT 88
Query: 116 EVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRG 175
+ +P ++GY LL I E + IPV+I MSS++ + +C+ G
Sbjct: 89 DYCMPGMTGYELLKKIKESSTFREIPVVI--------------MSSENVMARIDRCLEEG 134
Query: 176 AADYLVKPIRKNELRNLWQHSLAEVDGLQDESVGQDKVEATSENNAASNHSSGN 229
A D+LVKP++ ++++ + + A L K + TS N N+S+GN
Sbjct: 135 AEDFLVKPVKLSDVKRIRDYMTARELKL--------KSQQTSHN---FNNSTGN 177
>28094.m000169 two-component system sensor histidine kinase/response
regulator, putative
Length = 221
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 34/150 (22%)
Query: 68 LVEADDST--RQIIAALLRKCSYKVVAVPDGLKAWEML------RGRPH----------- 108
++ DDS R++I LL+ SY+V V G KA + L R P
Sbjct: 11 VLAVDDSLIDRKLIEKLLKISSYQVTTVDSGSKALQFLGLHEDDRSSPEIPSVSPNSHQE 70
Query: 109 -KIDLILTEVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNT 167
+++LI+T+ +P ++GY LL I E KNIPV+I MSS++
Sbjct: 71 VEVNLIITDYCMPGMTGYDLLKKIKESSSLKNIPVVI--------------MSSENVPAR 116
Query: 168 VYKCMLRGAADYLVKPIRKNELRNLWQHSL 197
+ +C+ GA ++ +KP++ ++L L H +
Sbjct: 117 ITRCLEEGAEEFFLKPVQLSDLNRLRPHMM 146
>30147.m014021 two-component sensor protein histidine protein
kinase, putative
Length = 221
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 23/138 (16%)
Query: 64 LRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEML--RGRPH-------KIDLIL 114
L VL V+ R++I LL+ S KV AV G +A + L G K++LI+
Sbjct: 27 LHVLAVDDSLVDRKVIERLLKISSCKVTAVDSGTRALQYLGLDGEKSSVGFNDLKVNLIM 86
Query: 115 TEVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLR 174
T+ +P ++GY LL I E + IPV+I MSS++ + +C+
Sbjct: 87 TDYSMPGMTGYELLKKIKESSAFREIPVVI--------------MSSENILTRIDRCLEE 132
Query: 175 GAADYLVKPIRKNELRNL 192
GA +++VKP++ ++++ L
Sbjct: 133 GAEEFIVKPVKLSDVKRL 150
>29729.m002374 two-component system sensor histidine kinase/response
regulator, putative
Length = 155
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 24/137 (17%)
Query: 66 VLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEML----------RGRPHKIDLILT 115
VL V+ + R+++ LL+ KV +GL+A E L K++LI+T
Sbjct: 24 VLAVDDNLIDRKLVEKLLKNSCCKVTTAENGLRALEYLGLGDDDRNCLENNVSKVNLIIT 83
Query: 116 EVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRG 175
+ +P ++GY LL I E I K +PV+IV SS++ + KC+ G
Sbjct: 84 DYCMPGMTGYELLKKIKESSIMKEVPVVIV--------------SSENIPTRINKCLEEG 129
Query: 176 AADYLVKPIRKNELRNL 192
A +++KP++ ++++ L
Sbjct: 130 AQMFMLKPLKLSDVKKL 146
>30131.m007200 Two-component response regulator ARR8, putative
Length = 197
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 44/160 (27%)
Query: 68 LVEADDST--RQIIAALLRKCSYKVVAVPDGLKAWEML---------------------- 103
++ DDS R++I LL+ S+ V AV G KA E L
Sbjct: 11 VLAVDDSLIDRKLIERLLKTSSFHVTAVDSGSKALEFLGLNEEEEEEEEEEERRDSSPIS 70
Query: 104 ------RGRPHKIDLILTEVDLPSISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCA 157
+ +++LI+T+ +P ++GY LL I E + K+IPV+I
Sbjct: 71 VCPDDEHHQDLQVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVI------------- 117
Query: 158 VMSSQDATNTVYKCMLRGAADYLVKPIRKNELRNLWQHSL 197
MSS++ + + +C+ GA ++ +KP++ +++ L H +
Sbjct: 118 -MSSENVPSRINRCLEEGAEEFFLKPVQLSDVNKLKPHMM 156
>29929.m004753 Two-component response regulator ARR14, putative
Length = 338
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 23/137 (16%)
Query: 64 LRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTEVDLPSIS 123
LRV++V+ D + I+ +L++CS +V +LR + D+++++V +P +
Sbjct: 17 LRVVVVDDDPTWLSILERMLKRCSCEVTTCCSARDVLALLRENRYGYDIVISDVIMPGMD 76
Query: 124 GYALL-----SLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAAD 178
+ L L+TEH + +F V+S + V + + GA +
Sbjct: 77 VFLHLLFIGSMLLTEH----------LYRF--------TVISVDGERSRVMRGIQLGACE 118
Query: 179 YLVKPIRKNELRNLWQH 195
YL+KPIR ELRN+ QH
Sbjct: 119 YLLKPIRMKELRNICQH 135
>30054.m000786 transcription factor, putative
Length = 478
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 57 KLFPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWEMLRGRPHKIDLILTE 116
K FP+ LRVLL+E D + + I + L Y V + +A + +P + + E
Sbjct: 12 KDFPKG-LRVLLLEEDSISAEEIKSKLEAMDYIVSLFCNENEALSAISDKPESFHVAIVE 70
Query: 117 VDLPSISG-YALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRG 175
V + +G + L E K++P I+ S ++ T+ KC+ G
Sbjct: 71 VSTSNSNGNFKFL------ETAKDLPTIMTSNIHCLS--------------TMMKCIALG 110
Query: 176 AADYLVKPIRKNELRNLWQH 195
A ++L KP+ + +LRN+WQH
Sbjct: 111 AVEFLRKPLSEEKLRNIWQH 130
>27983.m000077 two-component system sensor histidine kinase/response
regulator, putative
Length = 132
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 64 LRVLLVEADDSTRQIIAALLRKCSY-KVVAVPDGLKAWEMLRGRPH--KIDLILTEVDLP 120
L L+V+ + R+I+ LLR+ + K+ DG KA ++L + ID+++T+ ++P
Sbjct: 5 LHFLVVDDFSTMRRILVNLLRELGHSKISEAEDGEKALQLLLAKDALIGIDIVVTDWNMP 64
Query: 121 SISGYALLSLITEHEICKNIPVIIVSKFKSIAFGDCAVMSSQDATNTVYKCMLRGAADYL 180
+ G+ LL I EH +PVI+V +++ + GA Y+
Sbjct: 65 VMGGFTLLQRIREHPDLHQLPVILV--------------TAEAKKENIISAAAAGADGYI 110
Query: 181 VKPIRKNELR 190
VKP L+
Sbjct: 111 VKPFNAATLK 120