Jatropha Genome Database

JcCB0030711.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.30 + phase: 0 /partial
         (265 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29640.m000411 Trigger factor, putative                                368   e-102

>29640.m000411 Trigger factor, putative
          Length = 542

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/269 (71%), Positives = 213/269 (79%), Gaps = 9/269 (3%)

Query: 1   MELCIRSRAILNWNQ-QIPQFLGK---FSVSATLNNQFLQVNKNKSKNPFNSYKLTPLWR 56
           MELCIRSR +LNWNQ Q  Q LGK   FSV  TL  QFL+   NK  N     K+  + R
Sbjct: 1   MELCIRSRLLLNWNQKQNLQLLGKRPLFSV--TLRTQFLEFKNNK--NLVCIQKVPSISR 56

Query: 57  QSHCPAFPQCARKXXXXXXXXXXXXXXXKDRLPADIRVTETVEPNSRLRLTVEVPEAVCD 116
           Q+H  AF  CARK               KD+LPADI+V E+ EPNS LRLTVEVP AVCD
Sbjct: 57  QTHRQAFVVCARKSAAASDSSVAVGPE-KDKLPADIKVIESQEPNSTLRLTVEVPPAVCD 115

Query: 117 DCYSRVMNEFMKQARVPGFRPGKNVPESILLSYVGKENVQKATIESVLKRTLPHAMSSVT 176
           DCY RVMNEFMKQA++PGFRPGKNVPESIL+SYVGKENVQKAT+ESVLKRTLPHAMSSVT
Sbjct: 116 DCYKRVMNEFMKQAKIPGFRPGKNVPESILMSYVGKENVQKATVESVLKRTLPHAMSSVT 175

Query: 177 GRALRDSIRIVTKFSDMEKAYSSLNTLRYDIIVDVAPEVKWIPENAYKILKIVVEIDSDV 236
           GRAL+DS+RI TKFSDMEK YSSLN+LRYD+IVDVAPEVKW+ ENAYK LKIVVEIDSD+
Sbjct: 176 GRALKDSVRIATKFSDMEKDYSSLNSLRYDVIVDVAPEVKWMSENAYKNLKIVVEIDSDI 235

Query: 237 DAQTASEKELRRRQKSLGAMRIVTDRGLQ 265
           DA  ASEKELR RQKSLGA++IVTDRGLQ
Sbjct: 236 DALRASEKELRHRQKSLGALKIVTDRGLQ 264