Jatropha Genome Database

JcCB0030711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.20 - phase: 0 
         (187 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29640.m000410 conserved hypothetical protein                          201   2e-52
29842.m003512 conserved hypothetical protein                           80   5e-16

>29640.m000410 conserved hypothetical protein
          Length = 192

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 128/192 (66%), Gaps = 9/192 (4%)

Query: 1   MEGVGSRLGRASSRYGPSATATVFNGPVRKWKKKWXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEG GSRLGRASSRYGPSATA VFNGPVRKWKKKW                         
Sbjct: 1   MEGGGSRLGRASSRYGPSATAAVFNGPVRKWKKKWVHVGPSSSSTGNHQNSRSNAHAHNN 60

Query: 61  XXTTNSRLLLCRWTPLSPADAT-------SEEPPKRKFRYTPIVVLEEEQRKAAKQVDHE 113
                SRLLLCRWTPLSP+ AT       SEEPPKRKFRYTPI VLEE ++KAA++VD+E
Sbjct: 61  NNNN-SRLLLCRWTPLSPSTATDGASSSSSEEPPKRKFRYTPIAVLEE-RKKAAEKVDNE 118

Query: 114 AKTDGTNQFTALHPSKNDELNNDTALKTETQDSNVSNLDLDLCLKGHNGDPDSVGRTKES 173
               GT+Q TAL   KNDELN+D+ LKTE QDSN+SNLDL LCLKGH  D DSVG +   
Sbjct: 119 GNASGTDQSTALETPKNDELNSDSDLKTENQDSNMSNLDLGLCLKGHYSDHDSVGESNGD 178

Query: 174 QVKKGGPGGLWT 185
           Q+KK   GG WT
Sbjct: 179 QMKKESSGGFWT 190


>29842.m003512 conserved hypothetical protein
          Length = 208

 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 96/199 (48%), Gaps = 42/199 (21%)

Query: 1   MEGVGSRLGRASSRYGPSATATVFNGPVRKWKKKWXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEGVG+RLGR+S+RYGP   ATVF+GPVRKWKK+W                         
Sbjct: 1   MEGVGARLGRSSTRYGP---ATVFSGPVRKWKKRWVHVSPSSNHNHSHNHNHNNSSSNG- 56

Query: 61  XXTTNSRLLLCRWTPLSPADATSEEPP-------------------KRKFRYTPIVVLEE 101
                S LLL +WTP S + + S+                      +RKF+Y P+ +LE+
Sbjct: 57  --NNGSHLLLYKWTPSSQSQSQSQSNNNSNSNHKNDDPPLLPDEPPRRKFKYIPVYLLEK 114

Query: 102 EQRKAAKQVDHEAKTDGTNQFTALHP-SKND------ELNNDTALKTET--------QDS 146
           ++ + A++ + EAK   ++   A  P SK+D      ++N+    +T++        QD 
Sbjct: 115 QKNEVAEKAEDEAKQ--SDAEVAAEPISKDDGFDEKPDINDIPMEETQSQGDNQVVRQDL 172

Query: 147 NVSNLDLDLCLKGHNGDPD 165
           N S LDL L L  H+ D D
Sbjct: 173 NESTLDLSLGLMSHDDDSD 191