Jatropha Genome Database

JcCB0030711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.10 + phase: 0 
         (343 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29640.m000409 Protein grpE, putative                                  365   e-101
29818.m000399 Protein grpE, putative                                   59   5e-09
29908.m005954 Protein grpE, putative                                   49   4e-06

>29640.m000409 Protein grpE, putative
          Length = 308

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/305 (63%), Positives = 220/305 (72%), Gaps = 29/305 (9%)

Query: 34  IFSNQIDSLISEHSKQFVPGQVSLFHHSALSSSPFQRFGFTSSASPETNEKEEGSTAENN 93
           IFSNQI+SL+  +S QFV GQVSLFHHSA SSSPFQRFGFTSSASPE NEKE GSTAENN
Sbjct: 33  IFSNQIESLVHVNSNQFVAGQVSLFHHSAFSSSPFQRFGFTSSASPEANEKE-GSTAENN 91

Query: 94  GASRNADAKPSNKTEDSASEESEKSGCNSESQPTMSQSVKRRRSGTKRTAFXXXXXXXXX 153
             S N + + SN  +   S E+ +   ++E   +M   VK                    
Sbjct: 92  ADSTNVEPETSN-GDTKPSNETREPDSDTEGDLSMDDLVK-------------------- 130

Query: 154 XXXXXXXXXXXXXXXXXXXXXXXXXMQDKVLRTYAEMENVMERTKREAENSKKFAVQNFA 213
                                    MQDKVLRTYAEMENVMERTKREAENS+KFA+QNFA
Sbjct: 131 -------LVAEKEELLKLKHKEIEKMQDKVLRTYAEMENVMERTKREAENSRKFAIQNFA 183

Query: 214 KSLLDVADNLGRASAVVKDSFSKIDASTDATGAVPLLKTLLEGVEMTEKQLADVFKKFGV 273
           K LLDVADNLGRAS+VVKDS+SKID STD  GAVPLLKTLLEGVEMTEKQLA+VF+K GV
Sbjct: 184 KGLLDVADNLGRASSVVKDSYSKIDTSTDTAGAVPLLKTLLEGVEMTEKQLAEVFRKSGV 243

Query: 274 EKFDPINEPFDPHKHYAVFQLPDASKPPGTVAAVLKAGYVLYDRVIRPAEVGVTIAVDND 333
           EK+DP +EPFDPH+H AVF++PD+SKPPGTVA VLKAGY+L+DRVIRPAEVGVT  V+ND
Sbjct: 244 EKYDPRDEPFDPHRHNAVFEVPDSSKPPGTVAVVLKAGYLLHDRVIRPAEVGVTKEVEND 303

Query: 334 TESSN 338
           T S+N
Sbjct: 304 TASNN 308


>29818.m000399 Protein grpE, putative
          Length = 356

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 19/151 (12%)

Query: 180 QDKVLRTYAEMENVMERTKREAENSKKFAVQNFAKSLLDVADNLGRASAVVK---DSFSK 236
           +D+VLR  A+ +N  +RT RE  +    A     ++LL V DN  RA A +K   +   K
Sbjct: 187 KDRVLRISADFDNFRKRTDRERLSLVSNAQGEVVENLLPVLDNFERAKAQIKLETEGEEK 246

Query: 237 IDASTDATGAVPLLKTLLEGVEMTEKQLADVFKKFGVEKFDPINEPFDPHKHYAVFQLPD 296
           I+ S  +                  KQ  ++    GV   + I  PFDP  H A+ +   
Sbjct: 247 INNSYQSIY----------------KQFVEILGSLGVVPVETIGNPFDPLLHEAIMREDS 290

Query: 297 ASKPPGTVAAVLKAGYVLYDRVIRPAEVGVT 327
                G +    + G+ L DR++RP+ V V+
Sbjct: 291 TEFEEGIILQEFRKGFKLGDRLLRPSMVKVS 321


>29908.m005954 Protein grpE, putative
          Length = 315

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 19/151 (12%)

Query: 180 QDKVLRTYAEMENVMERTKREAENSKKFAVQNFAKSLLDVADNLGRASAVVK---DSFSK 236
           ++K +R  A+ +N  +R+++E    +  A     +SLL + D+  RA   +K   +   K
Sbjct: 157 KEKYIRLQADFDNFRKRSEKERHTIRSDAQGEVIESLLPMVDSFERAKQQIKPETEMEKK 216

Query: 237 IDASTDATGAVPLLKTLLEGVEMTEKQLADVFKKFGVEKFDPINEPFDPHKHYAVFQLPD 296
           ID S              +G+    KQ  ++ +   V     + +PFDP  H A+ +   
Sbjct: 217 IDTS-------------YQGIY---KQFVEIMRSLQVAVVATVGKPFDPSLHEAIAREES 260

Query: 297 ASKPPGTVAAVLKAGYVLYDRVIRPAEVGVT 327
                G +    + G++L  R++RPA V V+
Sbjct: 261 QEYKEGIIIQEFRRGFLLGGRLLRPAMVKVS 291