Jatropha Genome Database

JcCB0028581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028581.10 + phase: 2 /pseudo/partial
         (323 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014251 conserved hypothetical protein                          278   4e-75

>30170.m014251 conserved hypothetical protein
          Length = 742

 Score =  278 bits (710), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 159/235 (67%), Positives = 175/235 (74%), Gaps = 18/235 (7%)

Query: 107 LFSLILPREDKVRLAKAEEKLIEDVRMLQQDVSSLRASLQ------------------RI 148
           + S++   EDKVRLAK EEKLIEDV+MLQ  VSS RASLQ                  RI
Sbjct: 508 MLSILKSTEDKVRLAKTEEKLIEDVQMLQHQVSSARASLQELSSTKSNIQQTISSFKQRI 567

Query: 149 FFIDKRVPELESEKKVAASTRNFKEAARIAAEAKSLYVEKDGVQIDLERTTAELEKLEED 208
           FFIDKRVPELE+EKKVAA+ RNFKEAARIAAEAKSL VEKDGVQIDLE+ T ELEKLE+D
Sbjct: 568 FFIDKRVPELEAEKKVAAAARNFKEAARIAAEAKSLSVEKDGVQIDLEKATLELEKLEKD 627

Query: 209 MKNTVSRLLDTEHLISSKEKEVAMARFQRLLLIAGAATAERVSALELGDSXXXXXXXXXX 268
           +K+TVSRL DTE LISSKEKEVAMARFQ LLLIAGAATAER +ALELGD+          
Sbjct: 628 IKSTVSRLQDTEQLISSKEKEVAMARFQSLLLIAGAATAERFAALELGDTEEANLLLAEA 687

Query: 269 XXXXXXXXXXQPIYNFNKEQFPNLPKHFISMELVFNLGRKQLADLAASVGISAPQ 323
                     QPIYNFN+E+F NLPKHFISMELV  LGRKQL +LAASV +SA Q
Sbjct: 688 EAANAEAKKLQPIYNFNEEEFSNLPKHFISMELVSKLGRKQLIELAASVDVSAKQ 742