Jatropha Genome Database

JcCB0028471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028471.20 + phase: 0 /partial
         (54 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008637 5'->3' exoribonuclease, putative                        101   9e-23
30170.m014167 5'->3' exoribonuclease, putative                         75   5e-15
30073.m002213 5'->3' exoribonuclease, putative                         70   3e-13

>30128.m008637 5'->3' exoribonuclease, putative
          Length = 964

 Score =  101 bits (251), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 49/51 (96%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
          MGVPAFYRWLADRYPLAIVDVVEEEPKED+NGV  PID+S+PNPNG+EFDN
Sbjct: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDSNGVIGPIDISKPNPNGLEFDN 51


>30170.m014167 5'->3' exoribonuclease, putative
          Length = 1113

 Score = 75.5 bits (184), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%), Gaps = 1/51 (1%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
          MGVPAFYRWLA++YPL +VD +EEEP    +GV IP+D SRPNPN +E+DN
Sbjct: 1  MGVPAFYRWLAEKYPLVVVDAIEEEPVV-IDGVKIPVDASRPNPNNIEYDN 50


>30073.m002213 5'->3' exoribonuclease, putative
          Length = 1545

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 1/51 (1%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
          MG+P+FY+WL ++YP  +VDV+E   +   NGV +PI+ + PNPNG+EFDN
Sbjct: 1  MGIPSFYKWLTEKYPDTVVDVIEAR-RRMGNGVLLPINTALPNPNGIEFDN 50