Jatropha Genome Database

JcCB0028391.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028391.20 + phase: 0 /partial
         (218 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008896 conserved hypothetical protein                          278   1e-75

>30174.m008896 conserved hypothetical protein
          Length = 630

 Score =  278 bits (712), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/225 (68%), Positives = 163/225 (72%), Gaps = 16/225 (7%)

Query: 1   MNPHKTE-HDLFHNHRH----DLGXXXXXXXXXXXXXXXSI--HDDLS-LPEIVLFRXXX 52
           MNPHKTE HDLFHNH H    DL                    HDD+S LPEIVLFR   
Sbjct: 1   MNPHKTEQHDLFHNHHHHRHHDLVPPTASSHQIIPPQSYPSLQHDDVSSLPEIVLFRSSS 60

Query: 53  XXXXXXXXXXXXXXLIHPTHSSSKSIVSGGTHAPAYINPEPHISSQFYTFNAESHSLMIR 112
                         LI+P         S   + PAYINPEPHISSQFYTFNA+SH+LMIR
Sbjct: 61  PDSPSQSSSDNDDSLINPK--------SDLPNPPAYINPEPHISSQFYTFNADSHALMIR 112

Query: 113 CILEHRLATPDEIRAATPGSVLKSWRAVWKDRNEDTAYVTGWKRIQEKLTAQVDPASGNE 172
           CILEHRLATPDEIR ATP SVLKSWR+VWKDRNEDTAY+TGWKRIQEKLTA VDP SGNE
Sbjct: 113 CILEHRLATPDEIRTATPRSVLKSWRSVWKDRNEDTAYITGWKRIQEKLTAHVDPTSGNE 172

Query: 173 FLCFKNNSQQFVSHINQWQDIVMSFHGDADLKHLGLRETIERINK 217
           FLCFKNNSQQFVSHINQWQDIVMSFHGDADLKHLGLRETIERI +
Sbjct: 173 FLCFKNNSQQFVSHINQWQDIVMSFHGDADLKHLGLRETIERIKQ 217