Jatropha Genome Database

JcCB0028271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028271.10 - phase: 0 /pseudo/partial
         (177 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014390 brca1 interacting protein helicase 1 brip1, putative    224   2e-59
29872.m000552 regulator of telomere elongation helicase 1 rtel1,...    79   1e-15

>30170.m014390 brca1 interacting protein helicase 1 brip1, putative
          Length = 1248

 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/130 (81%), Positives = 113/130 (86%)

Query: 20  YHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLA 79
           YHIGGIQVEFPYQPYG QLAFMGRVISTLDRA R+GHCHALLESPTGTGKSLSLLCSTLA
Sbjct: 19  YHIGGIQVEFPYQPYGPQLAFMGRVISTLDRAVRDGHCHALLESPTGTGKSLSLLCSTLA 78

Query: 80  WQQNYKFKYQHANLTPSKPNPEAMTDPLGHGGGFIPETQPSSIPPSGNVDPPQTTGANKG 139
           WQQNYK K Q A+LT SKPNPEA+TDP+GHGGGFIPETQPSSIPPSGN++  Q    +K 
Sbjct: 79  WQQNYKSKQQLADLTQSKPNPEAITDPIGHGGGFIPETQPSSIPPSGNLEAAQPAAVSKT 138

Query: 140 PKKNAAPYHF 149
            KK AAP  F
Sbjct: 139 QKKKAAPTIF 148


>29872.m000552 regulator of telomere elongation helicase 1 rtel1,
          putative
          Length = 1049

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 5/64 (7%)

Query: 20 YHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLA 79
          Y I GI V+FPY+ Y  QL +M +VI +L     +  C+ALLESPTGTGK+L LLC+TLA
Sbjct: 4  YKIRGIDVDFPYEAYDCQLVYMEKVIQSL-----QSRCNALLESPTGTGKTLCLLCATLA 58

Query: 80 WQQN 83
          W+++
Sbjct: 59 WRKS 62