Jatropha Genome Database

JcCB0028241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028241.10 + phase: 0 
         (250 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27467.m000162 Allene oxide cyclase 4, chloroplast precursor, put...   317   5e-87
29738.m001053 Allene oxide cyclase 3, chloroplast precursor, put...   257   4e-69

>27467.m000162 Allene oxide cyclase 4, chloroplast precursor,
           putative
          Length = 263

 Score =  317 bits (811), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 163/236 (69%), Positives = 188/236 (79%), Gaps = 17/236 (7%)

Query: 26  TKSLRLPSMPANPSLSFS-------SKTSIFNNRINNTFSVPKRSFSCKSQAS---DDST 75
           TKSL LP   ANPS  F+       SK++ FNN     F++PKRSFSCK+QA+   D+S 
Sbjct: 34  TKSL-LPFKIANPSSPFTHNPRLLLSKSAAFNN-----FNLPKRSFSCKNQAAPSDDNSR 87

Query: 76  PSKFQELHVYEINERDRGSPAYLRLSQKEVNSLGDLVPFSNKLYTGDLQKRIGITAGICI 135
           P++ QEL VYEINERDRGSPAYLRLSQK+VNSLGDLVPFSNKLYTGDLQ+RIGITAGICI
Sbjct: 88  PTEVQELCVYEINERDRGSPAYLRLSQKQVNSLGDLVPFSNKLYTGDLQQRIGITAGICI 147

Query: 136 LIEHKAEKKGDRYEAIYSFYFGDYGHIAVQGAYLTYEDSYLAVTGGTGIFEGVSGQVKLR 195
           LI++K E KGDRYEAIYSFYFGDYGH+AVQG YLT+ED+YLAVTGG+GIFEG  GQVKL+
Sbjct: 148 LIQNKPEMKGDRYEAIYSFYFGDYGHLAVQGPYLTFEDTYLAVTGGSGIFEGAYGQVKLQ 207

Query: 196 QLIFPFKLFYTFYLKGIK-DLPEELVGKXXXXXXXXXXXXXXKACQPHAALVNFTD 250
           Q++FPFKLFYTFYLKG+K DLP+EL+ K              KACQPHA + NFTD
Sbjct: 208 QIVFPFKLFYTFYLKGLKTDLPDELLRKPTEPHPAVEPHPDAKACQPHATVANFTD 263


>29738.m001053 Allene oxide cyclase 3, chloroplast precursor,
           putative
          Length = 259

 Score =  257 bits (656), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 151/192 (78%), Gaps = 2/192 (1%)

Query: 61  KRSFSCKSQASDDS-TPSKFQELHVYEINERDRGSPAYLRLSQK-EVNSLGDLVPFSNKL 118
           K  FS K  +  +S  P+K QEL+VYEINERDR SPA L+LS+K +  +LGDLVPF+NKL
Sbjct: 68  KAFFSTKPASLQESPRPTKIQELNVYEINERDRESPAILKLSKKPDQLALGDLVPFTNKL 127

Query: 119 YTGDLQKRIGITAGICILIEHKAEKKGDRYEAIYSFYFGDYGHIAVQGAYLTYEDSYLAV 178
           Y+GDL+KR+GITAG+ +LI+H  EK GDRYEAIYSFYFGDYGHI+VQGAYLTY+D+YLAV
Sbjct: 128 YSGDLKKRLGITAGLSVLIKHVPEKNGDRYEAIYSFYFGDYGHISVQGAYLTYDDTYLAV 187

Query: 179 TGGTGIFEGVSGQVKLRQLIFPFKLFYTFYLKGIKDLPEELVGKXXXXXXXXXXXXXXKA 238
           TGGTGIFEGV GQVKL Q++FP+KLFYTFYLKGI DLP+EL+G               KA
Sbjct: 188 TGGTGIFEGVYGQVKLHQIVFPYKLFYTFYLKGIPDLPDELLGTPVTPSLTVEPASTAKA 247

Query: 239 CQPHAALVNFTD 250
            QP   +++FTD
Sbjct: 248 AQPSGTILHFTD 259