Jatropha Genome Database

JcCB0027171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027171.10 + phase: 0 /partial
         (172 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29602.m000211 conserved hypothetical protein                          105   7e-24

>29602.m000211 conserved hypothetical protein
          Length = 348

 Score =  105 bits (263), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 58/66 (87%)

Query: 6   RRQGIYCRYHKSKASEVYSTTRTELRGGNLKTAFRDTLKSQGIYLVDPLSDKTNINKPVQ 65
           +RQGIYCR+HKSKASE++ST RTEL+GGNL+TAFRD LKSQGI+++DPL+D+TN     Q
Sbjct: 241 KRQGIYCRFHKSKASEIFSTKRTELKGGNLRTAFRDPLKSQGIHIIDPLADRTNNKNSRQ 300

Query: 66  PLKLLS 71
           P++ LS
Sbjct: 301 PVQFLS 306