Jatropha Genome Database

JcCB0026071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0026071.10 - phase: 0 
         (171 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27524.m000290 Ribulose bisphosphate carboxylase small chain, chl...   204   1e-53
30167.m000889 Ribulose bisphosphate carboxylase small chain 1B, ...   196   5e-51
29974.m000232 Ribulose bisphosphate carboxylase small chain, chl...   192   8e-50
29763.m000188 ribulose-bisphosphate carboxylase, putative             144   3e-35
29763.m000189 conserved hypothetical protein                           93   5e-20

>27524.m000290 Ribulose bisphosphate carboxylase small chain,
           chloroplast precursor, putative
          Length = 180

 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 92/155 (59%), Positives = 120/155 (77%), Gaps = 5/155 (3%)

Query: 17  YQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNPINNKKFETLSYLPPLSDDS 75
           + GLK++S   +FP     + +  T+ SNG ++HCM+ W P+  KKFETLSYLPPLS++S
Sbjct: 26  FTGLKSSS---VFPVTRKQNNDITTLASNGGKVHCMQVWPPVGKKKFETLSYLPPLSEES 82

Query: 76  IAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRYWTLWKLPMFGCNDSAQVLN 134
           +AK +DY+++MGW+PCLEF+ E G V REN R PGYYDGR WT+WKLPMFGC DS+QVL 
Sbjct: 83  LAKEVDYLLRMGWVPCLEFELEHGFVYRENHRSPGYYDGRCWTMWKLPMFGCTDSSQVLK 142

Query: 135 EMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           E+ E KKAYPN++IR + FDNK+Q QC+SFI  KP
Sbjct: 143 ELEEAKKAYPNSFIRIIGFDNKRQVQCISFIAYKP 177


>30167.m000889 Ribulose bisphosphate carboxylase small chain 1B,
           chloroplast precursor, putative
          Length = 181

 Score =  196 bits (498), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 118/161 (73%), Gaps = 5/161 (3%)

Query: 11  AVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNPINNKKFETLSYLP 69
           A   + + GLK+ ++   FP     + +  ++ SNG R+ CM+ W P+  KKFETLSYLP
Sbjct: 19  ATMVAPFTGLKSAAS---FPVTRKANNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLP 75

Query: 70  PLSDDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRYWTLWKLPMFGCND 128
            L+D+ +AK +DY+++ GWIPCLEF+ E G V REN R PGYYDGRYWT+WKLPMFGC+D
Sbjct: 76  DLTDEQLAKEVDYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCSD 135

Query: 129 SAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           S QVL E+ E KKAYPN++IR + FDN++Q QC+SFI  KP
Sbjct: 136 STQVLKELDEAKKAYPNSFIRIIGFDNRRQVQCISFIAYKP 176


>29974.m000232 Ribulose bisphosphate carboxylase small chain,
           chloroplast precursor, putative
          Length = 185

 Score =  192 bits (487), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 114/155 (73%), Gaps = 5/155 (3%)

Query: 17  YQGLKANSAKQLFPAKDSISWNSKTVSN-GSRIHCMKTWNPINNKKFETLSYLPPLSDDS 75
           + GLK+ SA   FP     + +  T++N G R+ CM+ W P+  KKFETLSYLP L+ + 
Sbjct: 28  FTGLKSTSA---FPVTRKTNTDITTLANNGGRVQCMQVWPPLGKKKFETLSYLPDLTREQ 84

Query: 76  IAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRYWTLWKLPMFGCNDSAQVLN 134
           +AK ++Y+++ GW+PCLEF+ E G V REN+R PGYYDGRYWT+WKLPMFGC+D+ QVL 
Sbjct: 85  LAKEVEYLLRKGWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCSDAVQVLK 144

Query: 135 EMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           E+ E  KAYPN+++R + FDN +Q QC+SFI  KP
Sbjct: 145 ELDEAIKAYPNSFVRIIGFDNVRQVQCISFIAYKP 179


>29763.m000188 ribulose-bisphosphate carboxylase, putative
          Length = 94

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 69/73 (94%)

Query: 98  GHVRRENSRMPGYYDGRYWTLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKK 157
           G+V RENSRMPGYYDGRYWTLWKLPMFGCNDS+QVLNE++ECKKAYPNAYIRCLAFDN +
Sbjct: 18  GYVHRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVLNEINECKKAYPNAYIRCLAFDNTR 77

Query: 158 QCQCMSFIIQKPQ 170
           Q QCMSF+IQ P+
Sbjct: 78  QAQCMSFVIQNPK 90


>29763.m000189 conserved hypothetical protein
          Length = 81

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 51/61 (83%), Gaps = 1/61 (1%)

Query: 4  SAGILTSAVAGSGYQGLKANSAKQLFPAKD-SISWNSKTVSNGSRIHCMKTWNPINNKKF 62
          SAGI T+ VAGSGY GLKANS KQ+FPAKD S++W+ KTVSNGS+ +CMKTWNPINN K 
Sbjct: 2  SAGIFTAPVAGSGYHGLKANSTKQVFPAKDSSVAWSRKTVSNGSKTYCMKTWNPINNTKL 61

Query: 63 E 63
           
Sbjct: 62 R 62