Jatropha Genome Database

JcCB0025751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025751.10 - phase: 0 /partial
         (191 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30156.m001758 DNA polymerase delta catalytic subunit, putative        329   4e-91
30128.m008782 DNA polymerase zeta catalytic subunit, putative          71   4e-13

>30156.m001758 DNA polymerase delta catalytic subunit, putative
          Length = 1049

 Score =  329 bits (844), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 164/208 (78%), Positives = 166/208 (79%), Gaps = 17/208 (8%)

Query: 1    RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRI 60
            RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRI
Sbjct: 842  RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRI 901

Query: 61   FEPILKNASKELLHGXXXXXXXXXXXXXXXXMKFAKKQLSCI-----------------G 103
            FEPILKNASKELLHG                MKFAKKQL+                    
Sbjct: 902  FEPILKNASKELLHGSHTRSISISTPSNGGIMKFAKKQLTYFLQVRHIERHLICSIKFNS 961

Query: 104  CKALISNSDRTLCSHCKGREAELYCKTVSQVSELELLFGRLWTQCQECQGSLHQDVLCTS 163
            C+      DRTLCSHCKGREAELYCKTVSQVSELELLFGRLWTQCQECQGSLHQDVLCTS
Sbjct: 962  CQYPALLYDRTLCSHCKGREAELYCKTVSQVSELELLFGRLWTQCQECQGSLHQDVLCTS 1021

Query: 164  RDCPIFYRRKKAQKDMAEAKRQLDRWNF 191
            RDCPIFYRRKKAQKDMAEAKRQLDRWNF
Sbjct: 1022 RDCPIFYRRKKAQKDMAEAKRQLDRWNF 1049


>30128.m008782 DNA polymerase zeta catalytic subunit, putative
          Length = 2066

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 12/189 (6%)

Query: 2    DAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIP--IDPQYYLENQISKPLLR 59
            D    P   +RVPYV+I    GA+  +   DP+ +L  + P  ++  YY+  QI   L R
Sbjct: 989  DPRAEPRYAERVPYVVIHGEPGARLVDMVVDPLDLLAIDSPYRLNDIYYISKQIIPALQR 1048

Query: 60   IFEPILKNASKELLH----GXXXXXXXXXXXXXXXXMKFAKKQLS--CIGCKALISNSDR 113
            +F  +  + ++  L     G                 +     LS  C+ C  L++ S R
Sbjct: 1049 VFGLLGADLNQWFLEMPRPGRDTYAKRPSYGSNPQRTRIDYYYLSKHCVLCDELVNASTR 1108

Query: 114  TLCSHCKGREAELYCKTVSQVSELELLFGRLWTQCQECQGS---LHQDVLCTSRDCPIFY 170
             LC+ C  +E       + + S+LE     L   C+ C G    L   V CTS  C +FY
Sbjct: 1109 -LCNKCSQKETAAATAVIGRTSKLEREMQHLAAICRHCGGGDWLLESGVKCTSLACSVFY 1167

Query: 171  RRKKAQKDM 179
             R+K QK++
Sbjct: 1168 ERRKVQKEL 1176