Jatropha Genome Database

JcCB0025551.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025551.20 + phase: 2 /partial
         (206 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003770 Maintenance of ploidy protein mob1, putative            418   e-118
29827.m002572 Maintenance of ploidy protein mob1, putative            224   1e-59

>29739.m003770 Maintenance of ploidy protein mob1, putative
          Length = 215

 Score =  418 bits (1075), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/206 (94%), Positives = 204/206 (99%)

Query: 1   NQKTFRPKKNAPSGSKGAQLQKHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQV 60
           NQKTFRPKKNAPSGSKGAQLQKHIDATLGSGNLREAVRLPPGED+NEWLAVNTVDFFNQV
Sbjct: 10  NQKTFRPKKNAPSGSKGAQLQKHIDATLGSGNLREAVRLPPGEDVNEWLAVNTVDFFNQV 69

Query: 61  NILYGTLTEFCTATSCPTMTAGPKYEYRWADGITIKKPIEVSAPKYVEYLMDWIEAQLDD 120
           NILYGTLTEFCTA++CPTMTAGPKYEYRWADG+TIKKPIEVSAPKYVE+LMDWIE QLDD
Sbjct: 70  NILYGTLTEFCTASNCPTMTAGPKYEYRWADGVTIKKPIEVSAPKYVEFLMDWIETQLDD 129

Query: 121 EMIFPQKLGAPFPTNFRDVVKTIFKRLFRVYAHIYHEHFQKIVSLKEEAHLNTCFKHFVL 180
           EMIFPQKLGAPFP NFRDVV+TIFKR+FRVYAHIYHEHFQKIVSL+EEAHLNTCFKHFVL
Sbjct: 130 EMIFPQKLGAPFPPNFRDVVRTIFKRMFRVYAHIYHEHFQKIVSLREEAHLNTCFKHFVL 189

Query: 181 FTWEFRLIDKGELAPLQDLVESILQL 206
           FTWEFRLID+GELAPLQDLV+SILQL
Sbjct: 190 FTWEFRLIDRGELAPLQDLVDSILQL 215


>29827.m002572 Maintenance of ploidy protein mob1, putative
          Length = 158

 Score =  224 bits (572), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/121 (85%), Positives = 115/121 (95%)

Query: 84  KYEYRWADGITIKKPIEVSAPKYVEYLMDWIEAQLDDEMIFPQKLGAPFPTNFRDVVKTI 143
           +YEYRWADG+ IKKPIEVSAPKYVEYLMDWIEAQLDDE IFPQKLGAPFP NF++VVKTI
Sbjct: 35  RYEYRWADGVQIKKPIEVSAPKYVEYLMDWIEAQLDDESIFPQKLGAPFPPNFKEVVKTI 94

Query: 144 FKRLFRVYAHIYHEHFQKIVSLKEEAHLNTCFKHFVLFTWEFRLIDKGELAPLQDLVESI 203
           FKRLFRVYAHIY+ HFQKIVSLKEEAHLNTCFKHF+LFT+EF LIDK ELAPLQ+L++SI
Sbjct: 95  FKRLFRVYAHIYYSHFQKIVSLKEEAHLNTCFKHFILFTYEFGLIDKKELAPLQELIDSI 154

Query: 204 L 204
           +
Sbjct: 155 I 155