Jatropha Genome Database

JcCB0025091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025091.20 + phase: 0 
         (95 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011275 conserved hypothetical protein                          131   6e-32

>30190.m011275 conserved hypothetical protein
          Length = 66

 Score =  131 bits (330), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 62/66 (93%), Positives = 65/66 (98%)

Query: 30 MTPATYHPTHSRTLPPPDQVISTEAKNILLRNFYERAEERLRPKRAASESLIPEHGCKQP 89
          MTPATYHPTHSRTLPPPDQVI+TEAKNILLRNFYERAEE+LR KRAASE+LIPEHGCKQP
Sbjct: 1  MTPATYHPTHSRTLPPPDQVITTEAKNILLRNFYERAEEKLRTKRAASENLIPEHGCKQP 60

Query: 90 RASTSC 95
          RASTSC
Sbjct: 61 RASTSC 66