Jatropha Genome Database
- JcCB0023791.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0023791.10 + phase: 0 /partial
(112 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30174.m009078 protein binding protein, putative 108 6e-25
29790.m000820 60S ribosomal protein L7a, putative 105 5e-24
30190.m011246 protein binding protein, putative 86 5e-18
30174.m008629 protein binding protein, putative 76 4e-15
29844.m003346 protein binding protein, putative 66 4e-12
29333.m001082 protein binding protein, putative 60 3e-10
29784.m000358 RING-H2 finger protein ATL4M, putative 49 5e-07
28644.m000908 zinc finger protein, putative 49 7e-07
30138.m003891 hypothetical protein 48 8e-07
30147.m013961 protein binding protein, putative 46 4e-06
30074.m001341 t7n9.7, putative 45 5e-06
30190.m010835 ring finger protein, putative 45 5e-06
29742.m001427 RING-H2 finger protein ATL3K, putative 45 5e-06
28790.m000019 zinc finger protein, putative 45 8e-06
29912.m005444 hypothetical protein 45 9e-06
29717.m000228 zinc finger protein, putative 45 1e-05
>30174.m009078 protein binding protein, putative
Length = 223
Score = 108 bits (269), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 5/83 (6%)
Query: 9 VRSSDYNNSSKSPHPIRESK--LEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQH 66
V S++Y++S+ +PIR SK +E + YAS DDEDVCPTCLE+Y+FDNPRIVT C+H
Sbjct: 130 VTSNEYDSST---YPIRHSKEKMEPHLLNFYASLDDEDVCPTCLEEYTFDNPRIVTECKH 186
Query: 67 HFHLGCIYEWMERSQSCPLCFKV 89
H+HLGCIYEW ERS+ CP+C K+
Sbjct: 187 HYHLGCIYEWQERSEHCPVCDKL 209
>29790.m000820 60S ribosomal protein L7a, putative
Length = 570
Score = 105 bits (262), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 18 SKSPHPIRESKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWM 77
++S +K I Y+Y+S +DEDVCPTCLE+Y+ +NP+IVT C HHFHLGCIYEWM
Sbjct: 149 ARSSLKFLSAKSTVGIGYVYSSSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWM 208
Query: 78 ERSQSCPLCFK---VINFFNLYL 97
ERS SCP+C K +++F ++L
Sbjct: 209 ERSDSCPVCGKFDLLLHFHEIWL 231
>30190.m011246 protein binding protein, putative
Length = 212
Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 26 ESKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPL 85
E + + L ++ ++EDVCPTCLE+Y +NP+I T C+HHFHL CI EWMERS +CP+
Sbjct: 141 EVEFSKSVELLVSATEEEDVCPTCLEEYDAENPKITTKCEHHFHLSCILEWMERSDTCPV 200
Query: 86 CFK 88
C K
Sbjct: 201 CDK 203
>30174.m008629 protein binding protein, putative
Length = 199
Score = 75.9 bits (185), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 36 LYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
+ ++ ++ED CP CLE+Y NP+ T C+HHFHL CI EWMERS +CP+C + + F
Sbjct: 138 VVSATEEEDACPICLEEYDIQNPKFFTKCEHHFHLSCILEWMERSDTCPICDQEMVF 194
>29844.m003346 protein binding protein, putative
Length = 414
Score = 65.9 bits (159), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 43 EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVI 90
ED C CLE ++ NP VT C+H +HL CI EW +RS+ CP+C++++
Sbjct: 51 EDCCSICLEPFTSQNPSTVTSCKHEYHLQCILEWSQRSKECPICWQLL 98
>29333.m001082 protein binding protein, putative
Length = 378
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 43 EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
+D C CLE++ +P VT+C+H +HL CI EW +RS CP+C + I+
Sbjct: 33 DDACSICLEEFCESDPSTVTNCKHEYHLQCILEWCQRSSDCPMCLQPISL 82
>29784.m000358 RING-H2 finger protein ATL4M, putative
Length = 235
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 39 SQDDEDVCPTCLEDYSF-DNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
+ ++ C CL+D+ + R + HC H FHL CI +W+ R SCPLC
Sbjct: 183 ASGEKVACSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLLRHASCPLC 231
>28644.m000908 zinc finger protein, putative
Length = 246
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 28 KLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
KL+ E + A Q +D CP CLE+ I C H FH CI+ W+E SCP+C
Sbjct: 183 KLKNERHFAAAGQSGDD-CPICLEEICDGVELIKVPCNHIFHEKCIFRWLENRNSCPIC 240
>30138.m003891 hypothetical protein
Length = 157
Score = 48.1 bits (113), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 20 SPHPIRESKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMER 79
S P ES EA + +D C CLE+ + + T C HH+ CIY+W++R
Sbjct: 87 SLDPASESSPEA-FKKVKEIKDSMSQCTICLEELLIGSEVVCTPCSHHYRDTCIYDWLKR 145
Query: 80 SQSCPLC 86
S+ CPLC
Sbjct: 146 SRVCPLC 152
>30147.m013961 protein binding protein, putative
Length = 381
Score = 45.8 bits (107), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 46 CPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
CP CLE++ N C H+FH+ CI EW+ + CP C
Sbjct: 235 CPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRC 275
>30074.m001341 t7n9.7, putative
Length = 337
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 46 CPTCLEDY-SFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
CP CL DY + D + + C H FH+ CI W+ +CPLC
Sbjct: 106 CPVCLGDYQAEDRLQQIPACGHTFHMVCIDHWLANHTTCPLC 147
>30190.m010835 ring finger protein, putative
Length = 392
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 40 QDDEDVCPTCLEDYS-FDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
+ +++ CP CL +Y + R + C H+FH CI EW++ + +CPLC
Sbjct: 305 KPNDNTCPICLCEYQPKETLRTIPECNHYFHADCIDEWLKMNATCPLC 352
>29742.m001427 RING-H2 finger protein ATL3K, putative
Length = 374
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 26 ESKLEAEITYLYASQDDEDVCPTCLEDY-SFDNPRIVTHCQHHFHLGCIYEWMERSQSCP 84
E + E L A ++D C CL +Y S + R + C+H FH+ CI EW++ + SCP
Sbjct: 300 EKVVLGESMRLPAGRND-STCAICLAEYRSKETLRCIPECKHCFHVECIDEWLKMNSSCP 358
Query: 85 LC 86
+C
Sbjct: 359 VC 360
>28790.m000019 zinc finger protein, putative
Length = 234
Score = 44.7 bits (104), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 20 SPHPIRESKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMER 79
P P +S +EA +++ + C C+++ I C H++H CI W++
Sbjct: 162 KPKPATKSSIEALERFVFDDVESSKDCTICMDEIEVGMQAIRMPCSHYYHQDCIINWLQN 221
Query: 80 SQSCPLC 86
S CPLC
Sbjct: 222 SHFCPLC 228
>29912.m005444 hypothetical protein
Length = 109
Score = 44.7 bits (104), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 22 HPIRESKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTH---CQHHFHLGCIYEWME 78
H I ES S DD DVC C+E F +P + C H +H CI W+
Sbjct: 35 HQISESDSLVADMPTVTSTDDHDVCSICME--GFQSPGVCGKQVPCGHVYHAPCISSWLS 92
Query: 79 RSQSCPLC 86
SCPLC
Sbjct: 93 NCNSCPLC 100
>29717.m000228 zinc finger protein, putative
Length = 155
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 35 YLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCF 87
+ A+ D CP CLE+ I C H FH CI+ W+E SCP+C
Sbjct: 98 HFAATGRSGDDCPICLEEICDGVELIKMPCNHIFHERCIFRWLENRNSCPICL 150