Jatropha Genome Database

JcCB0022671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022671.10 + phase: 2 /partial
         (423 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002049 conserved hypothetical protein                          648   0.0  

>29647.m002049 conserved hypothetical protein
          Length = 957

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/415 (77%), Positives = 358/415 (86%), Gaps = 8/415 (1%)

Query: 15  LVRVFFNQLHSLISPADFEENQAQEIKFERSISLDKFSKLDINEHHQEAQSTVGYSPLLK 74
           L+RVFFNQL SLI+ ADFE+NQ QEIKFERSISL+KF KLDINEH QEAQST GYS  L 
Sbjct: 544 LLRVFFNQLQSLINTADFEQNQVQEIKFERSISLEKFCKLDINEHQQEAQSTGGYSSALS 603

Query: 75  KETSTLNNVSSNQKEEMSENSAF-QEEQLNFKNERMNRGDDAMKEDKGKAGGTASAVSRE 133
           K+  +  N+SSN+KEE+SENSAF +EEQL+F+NE M  GDDAM+E+K K+GGTAS + RE
Sbjct: 604 KKELSNRNISSNRKEEISENSAFLEEEQLSFRNEHMKYGDDAMREEKDKSGGTASTIKRE 663

Query: 134 MDRDFQNVETSGSDTSSTRGKNFVGQMGNGDFAKSSDLVKENGRQGVQEDGKVGTIQFEE 193
           +DRDFQN+ETSGSDTSSTRGKNF GQ+GN DF KSS+  KENG QGVQE  KV TIQFEE
Sbjct: 664 IDRDFQNIETSGSDTSSTRGKNFAGQLGNSDFPKSSEHKKENGLQGVQEGEKVETIQFEE 723

Query: 194 K-PRKRKRTIMNDYQMSLIEKALVDEPDMQRNSASIQRWADKLSIHGSEVTFSQLKNWLN 252
           K PRKRKRTIMN+YQMSLIE+ALVDEPDM RN+AS+Q WADKLS+HGSEVT SQLKNWLN
Sbjct: 724 KQPRKRKRTIMNEYQMSLIEEALVDEPDMHRNAASLQSWADKLSLHGSEVTSSQLKNWLN 783

Query: 253 NRKARLARAG--KDVRAPVEFDSAHSVKQGMST--HSHDSPESRGEDNAPSGARLVPSTS 308
           NRKARLARAG  KDVR P+E D A S KQ +    HSHDS ES GE N P+GARL  ST+
Sbjct: 784 NRKARLARAGAGKDVRTPMEVDHALSEKQSVPALRHSHDSSESHGEVNVPAGARL--STA 841

Query: 309 RIGTSENAETSLAEFVGIGAAEFVQCKPGQYVVLVDKQGEEIGKAKVYQVQGKWYGKNLE 368
           RIG++ENAE SLA+F GI AAE VQCKPGQYVVLVDKQG+EIGK KVYQVQGKWYGK+LE
Sbjct: 842 RIGSAENAEISLAQFFGIDAAELVQCKPGQYVVLVDKQGDEIGKGKVYQVQGKWYGKSLE 901

Query: 369 ESETCVVDVTELKADRWVRLPYPSEATGTSFSEAETKLGVMRVLWDSNKIFMFRP 423
           ESETCVVDVTELKA+RWVRLPYPSEATGTSFSEAETKLGVMRVLWDSNKIFM RP
Sbjct: 902 ESETCVVDVTELKAERWVRLPYPSEATGTSFSEAETKLGVMRVLWDSNKIFMSRP 956