Jatropha Genome Database

JcCB0022491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022491.10 - phase: 0 /pseudo
         (311 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002640 Nodulin-26, putative                                    105   2e-23
29588.m000860 Aquaporin NIP1.1, putative                               69   4e-12

>30068.m002640 Nodulin-26, putative
          Length = 298

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 54/78 (69%)

Query: 1  MPESEXXXXXXXXXXXXXXXXXXLFSSLRVDSLSYDRKSMPRCKCLPVNAPSWGQTHTCF 60
          MPESE                  LFS+LR+DSLSYDRKSMPRCKC PVNAP++G  HTCF
Sbjct: 1  MPESEAGTPTVSAPNTPGTPGGPLFSALRIDSLSYDRKSMPRCKCFPVNAPTFGPPHTCF 60

Query: 61 TDFPAPDVSLTRKMDINF 78
          TDFPAPD+SLTRK+   F
Sbjct: 61 TDFPAPDISLTRKLGAEF 78



 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 236 VGRNCSWSNCCAKHSCCG-MNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVK 294
           VG     +   A  S  G MNPVRTLGPAVAAGNY+A+WIYLVAP             VK
Sbjct: 222 VGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWIYLVAPTLGAIAGAGTYSAVK 281

Query: 295 LREDEADPPRQVRSFRR 311
           LRE+E DPPR VRSFRR
Sbjct: 282 LREEEVDPPRPVRSFRR 298


>29588.m000860 Aquaporin NIP1.1, putative
          Length = 308

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 236 VGRNCSWSNCCAKHSC-CGMNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVK 294
           VG   + +   A  +    MNPVRTLGPA+AA NYKAIW+YL API            VK
Sbjct: 229 VGATVTLNILIAGETTGASMNPVRTLGPAIAANNYKAIWVYLTAPILGALCGAGIYSAVK 288

Query: 295 LREDEADP---PRQVRSFRR 311
           L E++ D    P   RSFRR
Sbjct: 289 LPEEDGDAREKPSTARSFRR 308