Jatropha Genome Database

JcCB0022161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022161.10 - phase: 0 /pseudo
         (760 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014233 Structural maintenance of chromosome, putative         1300   0.0  
29656.m000496 Structural maintenance of chromosome, putative          133   3e-31
29125.m000032 structural maintenance of chromosomes smc, bacteri...   118   1e-26
29611.m000225 Structural maintenance of chromosome 1 protein, pu...    90   4e-18
29864.m001445 structural maintenance of chromosomes 5 smc5, puta...    51   2e-06
30147.m014241 structural maintenance of chromosomes 6 smc6, puta...    49   1e-05

>30147.m014233 Structural maintenance of chromosome, putative
          Length = 1176

 Score = 1300 bits (3365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/750 (85%), Positives = 674/750 (89%)

Query: 1   MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
           M+IKEICLEGFKSYATRTV+QGFDPFFNAITGLNGSGKSN+LDSICFVLGITNLQQVRAA
Sbjct: 1   MHIKEICLEGFKSYATRTVIQGFDPFFNAITGLNGSGKSNVLDSICFVLGITNLQQVRAA 60

Query: 61  NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGK 120
           NLQELVYKQGQAGITKATVSIVF NSDR RSPLGYEDHSEITVTRQIVVGGRNKYLINGK
Sbjct: 61  NLQELVYKQGQAGITKATVSIVFANSDRTRSPLGYEDHSEITVTRQIVVGGRNKYLINGK 120

Query: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKDA 180
           LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKK A
Sbjct: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKYA 180

Query: 181 ALKTLEKKQSKVDEINKLLDQEILPALEKLRKERIQYMQWANGNAELDRLKRFCIAYEYV 240
           ALKTLEKKQSKVDEINKLLDQEILPALEKLRKER+QYMQWANGNAELDRLKRFCIAYEYV
Sbjct: 181 ALKTLEKKQSKVDEINKLLDQEILPALEKLRKERMQYMQWANGNAELDRLKRFCIAYEYV 240

Query: 241 QAEEIRENTIGEVEQIKAKISEIDGDTEKTQVEIQEMETKISKLTAEKEASMGGEVKTLS 300
           QAE+IR+  +GEVEQIKAKISEID  TE+ QVEIQE+E+K+S+LTAEKEASMGGEVKTLS
Sbjct: 241 QAEKIRDTAVGEVEQIKAKISEIDDGTERIQVEIQELESKVSQLTAEKEASMGGEVKTLS 300

Query: 301 DKVHVLSQDLVREVSVLHNKEDTLRGENENAEKIVDGIEDLKQSVEEKATAVRKSEEGAA 360
           DKVHVLSQDLVREVSVL NKED+L+ E ENA KIV  IEDLKQSVEE+A AV  SEEGAA
Sbjct: 301 DKVHVLSQDLVREVSVLSNKEDSLKSEKENAGKIVSSIEDLKQSVEERAAAVVNSEEGAA 360

Query: 361 DLEKRVKELSKALEEHEKDYQGVLAGKSSGNEEKCLEDQLAEAKVAVGNAETELKQLKTK 420
            L+KRV ELSK+LEEHEKDYQGVLAGKSSGNEEKCLEDQLAEA+VAVGN ETELKQL TK
Sbjct: 361 QLKKRVDELSKSLEEHEKDYQGVLAGKSSGNEEKCLEDQLAEARVAVGNVETELKQLTTK 420

Query: 421 INHCXXXXXXXXXXXXXXRXXXXXXXXXXXXRSKDVENVNLALESLPYKEGQMEALQKDR 480
           I+HC              R            RSKDVENV LAL+SLPY EGQMEALQK+R
Sbjct: 421 ISHCQKELKEKKHQLMSKREEAISVENELNSRSKDVENVKLALDSLPYTEGQMEALQKER 480

Query: 481 ASEMDFLQKLKDKIRDLSAQLSNVQFTYRDPVKNFDRSKVKGVVAKLIKVKDSSTMTALE 540
           +SEM+ +QKLKD IRD SAQLSNVQFTYRDPVKNFDRSKVKGVVAKLIKVKDSST TALE
Sbjct: 481 SSEMELVQKLKDNIRDFSAQLSNVQFTYRDPVKNFDRSKVKGVVAKLIKVKDSSTATALE 540

Query: 541 VTAGGKLFNVVVDTENTGKQLLQNGELRRRVTIIPLNKIQSHTVPHRVQQAAIRLVGKGN 600
           VTAGGKLFNVVVDTENTGKQLLQNG+LRRRVTIIPLNKIQ HTVP RVQQAA RLVGKGN
Sbjct: 541 VTAGGKLFNVVVDTENTGKQLLQNGDLRRRVTIIPLNKIQPHTVPPRVQQAATRLVGKGN 600

Query: 601 AELALSLVGYDEDLRNAMEYVFGSTFVCKTMDAAKEIAFNREIRTPSVTVDGDIFQPSXX 660
           AELALSLVGYDEDLR+AMEYVFGSTFVCKT+DAAKEIAFNREIRTPSVT++GDIFQPS  
Sbjct: 601 AELALSLVGYDEDLRSAMEYVFGSTFVCKTIDAAKEIAFNREIRTPSVTLEGDIFQPSGL 660

Query: 661 XXXXXXXXXXXXXRQLHELANAESDLLLHQRKLSEIEAKITELLPRHKKFMELKKHLELK 720
                        R LHELA AESDLLLHQR+LSEIEAKI ELLP HKKF++LKK LELK
Sbjct: 661 LTGGSRKGGGDLLRLLHELAEAESDLLLHQRRLSEIEAKIMELLPLHKKFVDLKKQLELK 720

Query: 721 QYDLSLFQGRAEQNEHHKLGELVKKIEQEL 750
           QYDLSLFQGRAEQNEHHKLGE+VKKIEQEL
Sbjct: 721 QYDLSLFQGRAEQNEHHKLGEVVKKIEQEL 750


>29656.m000496 Structural maintenance of chromosome, putative
          Length = 1246

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 149/265 (56%), Gaps = 17/265 (6%)

Query: 1   MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
           MYIK++ +EGFKSY  +   + F P  N + G NGSGK+N   +I FVL     Q +R+ 
Sbjct: 1   MYIKQVIIEGFKSYREQIATENFSPKINCVVGANGSGKTNFFHAIRFVLSDL-FQNLRSE 59

Query: 61  NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGK 120
           +   L+++     +  A V IVFDNSD NR P+   D  E+ + R I +  +++Y ++GK
Sbjct: 60  DRHALLHEGAGHQVLSAFVEIVFDNSD-NRIPV---DKEEVRLRRTIGLK-KDEYFLDGK 114

Query: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKDA 180
               ++V NL  S   + +NP++++ QG+I  +  MK  E L +L+E  GTR+YE ++  
Sbjct: 115 HITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRE 174

Query: 181 ALKTLEK---KQSKVDEINKLLDQEILPALEKLRKERIQYMQWANGNAELDRLKRFCIAY 237
           +LK +++   K+ ++ ++ + LD E L  L++ ++E  +Y Q       LDR ++     
Sbjct: 175 SLKIMQETGNKRKQIIQVVQYLD-ERLRELDEEKEELRKYQQ-------LDRQRKSLEFT 226

Query: 238 EYVQAEEIRENTIGEVEQIKAKISE 262
            Y +        +GEV++ + ++SE
Sbjct: 227 IYDKELHDARQKLGEVKEARNRVSE 251



 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 15/139 (10%)

Query: 519 KVKGVVAKLIKVKDSST--MTALEVTAGGKLFNVVVDTENTGKQLLQ--NGELRRRVTII 574
           K+ GV   +I++ D      TA+EVTAG  LF+VVV+ +    Q+++  N     RVT I
Sbjct: 520 KINGVFGPIIELIDCDEKFFTAVEVTAGNSLFHVVVENDEISTQIIRHLNSSKGGRVTFI 579

Query: 575 PLNKIQSHTVPHRVQQAAIRLVGKGNAELALSLVGYDEDLRNAMEYVFGSTFVCKTMDAA 634
           PLN++++  V +      I L+ K         + +  +   A   VF  T +C+ +D A
Sbjct: 580 PLNRVKAPHVHYPQSSDVIPLLKK---------LKFSSNFTPAFAQVFARTVICRDLDVA 630

Query: 635 KEIAFNREIRTPSVTVDGD 653
             +A  R      +T++GD
Sbjct: 631 TRVA--RADGLDCITLEGD 647


>29125.m000032 structural maintenance of chromosomes smc, bacterial,
           putative
          Length = 333

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 12/224 (5%)

Query: 1   MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
           M++KEI LEGFKS+A +T ++ FD    A+ G NGSGKSNI +S+ + LG ++ + +R  
Sbjct: 1   MFLKEIELEGFKSFADKTKIE-FDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGG 59

Query: 61  NLQELVY--KQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLIN 118
            + ++++   Q +  +  A V++V DNSD            EI V R I   G + YLI+
Sbjct: 60  KMPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTA----KKEIRVERHIYRNGDSDYLID 115

Query: 119 GKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKK 178
           G+  +   + +LF    L   +   +I QGR+ ++ N KP E  ++ EEAAG   Y+T+K
Sbjct: 116 GRKVRLRDIHDLFMDTGLG-RDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLKYKTRK 174

Query: 179 DAALKTLEKKQSKVDEINKL---LDQEILPALEKLRKERIQYMQ 219
                 L + Q  +D +  +   LD ++ P LEK  K   Q+++
Sbjct: 175 KETQIKLNQTQDNLDRLEDIIYELDTQLAP-LEKQAKVAKQFLE 217


>29611.m000225 Structural maintenance of chromosome 1 protein,
           putative
          Length = 1220

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 34/205 (16%)

Query: 8   LEGFKSYATRTVVQGFDPF--FNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQEL 65
           +E FKSY  +   Q   PF  F AI G NG+GKSN++D+I FVLG+    Q+R A L++L
Sbjct: 15  IENFKSYKGQ---QTIGPFKDFTAIIGPNGAGKSNLMDAISFVLGVRT-GQLRGAQLKDL 70

Query: 66  VY-----KQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGK 120
           +Y     ++ Q G  +A V +V+               SE+  TR I   G ++Y I+GK
Sbjct: 71  IYAYDDREKEQKG-RRAYVRLVY----------LLASGSELHFTRTITSSGSSEYRIDGK 119

Query: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGT----RMYET 176
           +    +      S+ + V   +FL+ QG +  + +  P E+ ++LE+ +G+    R YE 
Sbjct: 120 VVNWDEYNGRLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSEDLKREYE- 178

Query: 177 KKDAALKTLEKKQSKVDEINKLLDQ 201
                   LE+++++ +E + L+ Q
Sbjct: 179 -------DLEERKARAEENSALVYQ 196


>29864.m001445 structural maintenance of chromosomes 5 smc5,
           putative
          Length = 1057

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 15/168 (8%)

Query: 3   IKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
           I E+ L  F +Y       G     N + G NGSGKS+I+ +I   LG       RA ++
Sbjct: 31  IIEMELHNFMTYDHLFCKPG--SRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSV 88

Query: 63  QELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLA 122
              V +  +    K ++              G      IT+ R+I    ++++L NGK+ 
Sbjct: 89  GAYVKRGEECAYIKISLR-------------GNTKDERITIMRKIDTHNKSEWLYNGKVV 135

Query: 123 QPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAG 170
              ++  +     + VNN    + Q R+ +   + P ++L   E+A G
Sbjct: 136 PKKEIGEITQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVG 183


>30147.m014241 structural maintenance of chromosomes 6 smc6,
           putative
          Length = 1058

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 3   IKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
           +  I LE F  ++   +     P+ N ITG NGSGKS IL ++C   G       RA+ L
Sbjct: 22  VTRIRLENFMCHSNLQI--ELCPWVNFITGQNGSGKSAILTALCIAFGSRAKGTQRASTL 79

Query: 63  QELVYKQGQAGITKATVSI-VFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYL--ING 119
           ++ +    + G + A V + V +  D    P  Y D   I + R+I     +  L    G
Sbjct: 80  KDFI----KTGCSYAVVEVEVKNEGDEAFKPEIYGD--AIIIERRINQSTSSTVLKDFQG 133

Query: 120 K--LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLN 155
           K   ++  +++ L     ++V NP  ++ Q +  + L+
Sbjct: 134 KKVASRKEELRELIEHFNIDVENPCVIMSQDKSREFLH 171