Jatropha Genome Database

JcCB0019891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019891.20 + phase: 1 /pseudo/partial
         (69 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29852.m001993 conserved hypothetical protein                           92   5e-20
55843.m000006 Photosystem I P700 chlorophyll a apoprotein A2, pu...    90   3e-19
45070.m000007 conserved hypothetical protein                           59   4e-10

>29852.m001993 conserved hypothetical protein
          Length = 292

 Score = 92.0 bits (227), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 56/75 (74%), Gaps = 7/75 (9%)

Query: 2   MLAFGIPEKQILIELIFDQWL*SAFGKTSY------ASTNSAATNVG*SIRLPG*LN-VN 54
           MLAFG PEKQILIE IF QW+  A GKTSY      +STNS A N G SI LPG LN +N
Sbjct: 154 MLAFGTPEKQILIEPIFAQWIQYAHGKTSYGFDVLLSSTNSPAFNAGRSIWLPGWLNAIN 213

Query: 55  ENSNSLFLTIGPGDF 69
           ENSNSLFLTIGPGDF
Sbjct: 214 ENSNSLFLTIGPGDF 228


>55843.m000006 Photosystem I P700 chlorophyll a apoprotein A2,
           putative
          Length = 314

 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 56/75 (74%), Gaps = 7/75 (9%)

Query: 2   MLAFGIPEKQILIELIFDQWL*SAFGKTSY------ASTNSAATNVG*SIRLPG*LN-VN 54
           MLAFG  EKQILIE IF QW+ SA GKTSY      +STNS A N G SI LPG LN +N
Sbjct: 154 MLAFGTLEKQILIEPIFAQWIQSAHGKTSYGFDVLLSSTNSPAFNAGRSIWLPGWLNAIN 213

Query: 55  ENSNSLFLTIGPGDF 69
           ENSNSLFLTIGPGDF
Sbjct: 214 ENSNSLFLTIGPGDF 228


>45070.m000007 conserved hypothetical protein
          Length = 207

 Score = 58.9 bits (141), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 37/54 (68%), Gaps = 6/54 (11%)

Query: 2   MLAFGIPEKQILIELIFDQWL*SAFGKTSY------ASTNSAATNVG*SIRLPG 49
           MLAFG  EKQILIE IF QW+ SA GKTSY      +STNS A N G SI LPG
Sbjct: 154 MLAFGTLEKQILIEPIFAQWIQSAHGKTSYGFDVLLSSTNSPAFNAGRSIWLPG 207