Jatropha Genome Database

JcCB0019891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019891.10 + phase: 1 /partial
         (584 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29583.m000186 conserved hypothetical protein                          223   2e-58

>29583.m000186 conserved hypothetical protein
          Length = 170

 Score =  223 bits (568), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 129/170 (75%), Gaps = 1/170 (0%)

Query: 416 LSYVQASILLCIGLQKQDFTYIEGQLKLERTQILSLFMKAMRRFHKYLYGIASDEIQSTL 475
           +SYVQAS+LLCIGLQ Q+ +YIEGQ+KLERTQILSLF+K M++FHKYLYGIAS EI STL
Sbjct: 1   MSYVQASVLLCIGLQHQNVSYIEGQMKLERTQILSLFIKVMKKFHKYLYGIASSEILSTL 60

Query: 476 PQLKERVLEPLKISVEDDLNEAAKQVEDEMKTKTEA-LNPELLQQYAIVDRDGDFENAXX 534
           P+LKE  LEP  I+VEDDLNEAAKQVED MK K E  LNPELLQQYAI D++GD ENA  
Sbjct: 61  PRLKEVKLEPHHITVEDDLNEAAKQVEDGMKAKMEGMLNPELLQQYAIEDKEGDLENALK 120

Query: 535 XXXXXXXXXXXXXXXXXXTKVEKHGKQESHKKGKRRKGDHSPKSNKKSKS 584
                             TKVEK GKQES   GK+RKGDHS +SNKK++S
Sbjct: 121 NGGGKMNSGGLISVKSSRTKVEKQGKQESRSSGKKRKGDHSSRSNKKNRS 170