Jatropha Genome Database

JcCB0019451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019451.10 + phase: 0 
         (188 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29791.m000547 histone deacetylase 1, 2 ,3, putative                   381   e-106
30147.m013886 histone deacetylase 1, 2 ,3, putative                   243   6e-65
29659.m000144 histone deacetylase 1, 2 ,3, putative                   215   1e-56
30055.m001629 Histone deacetylase, putative                            56   9e-09
30138.m003978 histone deacetylase hda1, putative                       54   6e-08
29794.m003331 histone deacetylase, putative                            52   2e-07

>29791.m000547 histone deacetylase 1, 2 ,3, putative
          Length = 429

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/188 (95%), Positives = 183/188 (97%)

Query: 1   MRSKDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL 60
           MRSKDRI+YFYDGDVG VYFGPNHPMKPHRLCMTHHLVLSY+LHKKMEIYRPHKAYPVEL
Sbjct: 1   MRSKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHS DYVEFLHRI PDTQHLFANEL RYNLGEDCPVF+NLFEFCQIYAGGTIDAARRL
Sbjct: 61  AQFHSTDYVEFLHRIVPDTQHLFANELARYNLGEDCPVFQNLFEFCQIYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NNQLCDIAINWAGGLHHAKKC ASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
Sbjct: 121 NNQLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180

Query: 181 EAFFFTDR 188
           EAF+FTDR
Sbjct: 181 EAFYFTDR 188


>30147.m013886 histone deacetylase 1, 2 ,3, putative
          Length = 468

 Score =  243 bits (619), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 144/187 (77%), Gaps = 2/187 (1%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K R+ YFY+  +G  Y+G  HPMKPHR+ M H+L++ Y LH++MEI RP  A  +++ +F
Sbjct: 19  KRRVTYFYEPTIGNYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASTIDIRKF 78

Query: 64  HSADYVEFLHRITPDTQHLFANE--LVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLN 121
           HS DYV+FL  ++P++    A+   L R+N+GEDCPVF+ LF FCQ  AGG++ AA +LN
Sbjct: 79  HSDDYVDFLSSVSPESLADPAHNRHLKRFNVGEDCPVFDGLFGFCQASAGGSMGAAVKLN 138

Query: 122 NQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEE 181
               DIA+NWAGGLHHAKK EASGFCY+ND+VLGILELLK H RVLY+DIDVHHGDGVEE
Sbjct: 139 RGDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEE 198

Query: 182 AFFFTDR 188
           AF+ TDR
Sbjct: 199 AFYTTDR 205


>29659.m000144 histone deacetylase 1, 2 ,3, putative
          Length = 455

 Score =  215 bits (547), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 122/156 (78%)

Query: 33  MTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFANELVRYNL 92
           MTH L+  Y L + M++ +P  A   +L +FH+ DYV FL  ITP+TQ     +L R+N+
Sbjct: 1   MTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVAFLRSITPETQQDQLRQLKRFNV 60

Query: 93  GEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDL 152
           GEDCPVF+ L+ FCQ YAGG++  A +LN+ LCDIAINWAGGLHHAKKCEASGFCY+ND+
Sbjct: 61  GEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDI 120

Query: 153 VLGILELLKYHARVLYIDIDVHHGDGVEEAFFFTDR 188
           VL ILELLK H RVLY+DID+HHGDGVEEAF+ TDR
Sbjct: 121 VLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDR 156


>30055.m001629 Histone deacetylase, putative
          Length = 382

 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 15/134 (11%)

Query: 59  ELAQFHSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAAR 118
           EL  FH++DY+  L     +   +  +     N G         ++ C + AG T+ A +
Sbjct: 81  ELLSFHTSDYINELVEADREGGKIICSSTF-LNPGS--------WDACLLAAGTTLSAMQ 131

Query: 119 RL---NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGI-LELLKYHARVLYIDIDVH 174
            L   + +L    +   G  HHA+  +A G+C++N+  L + L L   + +V  ID+DVH
Sbjct: 132 HLLDGHGKLAYALVRPPG--HHAQPTQADGYCFLNNAGLAVQLALDSGYRKVAVIDMDVH 189

Query: 175 HGDGVEEAFFFTDR 188
           +G+G  E F+ +DR
Sbjct: 190 YGNGTAEGFYHSDR 203


>30138.m003978 histone deacetylase hda1, putative
          Length = 654

 Score = 53.5 bits (127), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 22/175 (12%)

Query: 23  NHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHL 82
           NHP  P+R+    + +L+  + ++  +    +A    L   HS ++V  +  I+      
Sbjct: 33  NHPENPNRISAIWNKLLANSIPQRCVVLNAKEAEDKNLLAVHSKNHVNLIRNISSKQY-- 90

Query: 83  FANELVRYNLGEDCPVFENLF------EFCQIYAGGTIDAARRLNNQLCD--IAINWAGG 134
              E  R N+      F +++      E   + AG  ++ A R+     D   AI    G
Sbjct: 91  ---ESQRDNIASK---FNSIYFNQGSSEAAYLAAGSVVEVAERVAKGELDSAAAIVRPPG 144

Query: 135 LHHAKKCEASGFCYINDLVLGILELLKYH-----ARVLYIDIDVHHGDGVEEAFF 184
            HHA+  +A GFC  N++ +    LL  +      ++L +D DVHHG+G ++ F+
Sbjct: 145 -HHAEHDKAMGFCLFNNVAVAASFLLDENPELGIKKILIVDWDVHHGNGTQKTFW 198


>29794.m003331 histone deacetylase, putative
          Length = 342

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 7/167 (4%)

Query: 24  HPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLF 83
           HP    +       +++  +  K  I  P +A   +L   H   Y+  L R + +   + 
Sbjct: 68  HPFDSSKWGRVCRFLVTEGVLDKNSIVEPLEASKDDLLVVHLESYLSSL-RSSANVATII 126

Query: 84  ANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEA 143
             E+   +L  +C V + +    +   GGTI AA+    +    AIN  GG HH    + 
Sbjct: 127 --EVPPVSLFPNCLVQQKVLFPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSSGKG 182

Query: 144 SGFCYINDLVLGI-LELLKYH-ARVLYIDIDVHHGDGVEEAFFFTDR 188
            GFC   D+ L I    ++   +RV+ ID+D H G+G E  F+  +R
Sbjct: 183 GGFCAYADISLCIHFAFVRLRISRVMIIDLDAHQGNGHEMDFYDDNR 229