Jatropha Genome Database

JcCB0018541.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018541.30 + phase: 0 /short
         (46 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28355.m000100 hypothetical protein                                     87   1e-18
30190.m010805 conserved hypothetical protein                           64   1e-11
29729.m002384 hypothetical protein                                     60   3e-10

>28355.m000100 hypothetical protein
          Length = 916

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/39 (94%), Positives = 37/39 (94%)

Query: 1  MADSTKVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          M DSTKVRLVRCPKCENLLPELADYSVYQCGGCGAVLR 
Sbjct: 1  MTDSTKVRLVRCPKCENLLPELADYSVYQCGGCGAVLRA 39


>30190.m010805 conserved hypothetical protein
          Length = 934

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 6  KVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          KVR VRCPKCE+LL EL +YSVY+CGGCG++LR 
Sbjct: 8  KVRFVRCPKCESLLTELPNYSVYECGGCGSLLRA 41


>29729.m002384 hypothetical protein
          Length = 878

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 4  STKVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          S K+RLVRCPKC ++LPEL D  VY+CGGCG  L+ 
Sbjct: 6  SPKIRLVRCPKCRHILPELPDVPVYECGGCGTRLQA 41