Jatropha Genome Database

JcCB0018541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018541.20 + phase: 0 
         (129 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28355.m000099 conserved hypothetical protein                          106   3e-24
30190.m010804 hypothetical protein                                     58   1e-09

>28355.m000099 conserved hypothetical protein
          Length = 136

 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 74/105 (70%), Gaps = 10/105 (9%)

Query: 23  LAIWDLGSPLYDSYELVSVSYLIERHLMTLPSLGGGSRRLISRKVLPPPH-----PATIF 77
           LA+WDLGSPLYDSYE+VS+S+LIERHLMTLPSLG    R +S+K+ PPP      PAT+ 
Sbjct: 20  LAVWDLGSPLYDSYEVVSLSHLIERHLMTLPSLGS---RKLSKKIFPPPFSDNVVPATL- 75

Query: 78  VGAAAAGDCNHDRSSMVKSFRGFVKERLWRKKRNAIGPRKVKSES 122
             A++A     DR S+ K+ R F++ +LWRK++N +G  K   +S
Sbjct: 76  -PASSAEKDTLDRPSLAKTLREFIRVKLWRKRKNGVGDTKDDEKS 119


>30190.m010804 hypothetical protein
          Length = 127

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%), Gaps = 1/41 (2%)

Query: 25 IWDLGSPLYDSYELVSVSYLIERHLMTLPSLGGGSRRLISR 65
          +WD GSPLYDSYE+ SV ++IERH+M LPS   GS+R I R
Sbjct: 15 VWDCGSPLYDSYEIASVGHVIERHMMALPS-SCGSKRFIFR 54