Jatropha Genome Database

JcCB0018351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018351.20 + phase: 0 /partial/short
         (49 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m009167 conserved hypothetical protein                           99   3e-22
29635.m000466 conserved hypothetical protein                           80   3e-16
29736.m002073 conserved hypothetical protein                           60   3e-10
29822.m003437 conserved hypothetical protein                           51   9e-08

>30174.m009167 conserved hypothetical protein
          Length = 513

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%), Gaps = 1/49 (2%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVTTRDD 49
           KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIV TRD+
Sbjct: 466 KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIV-TRDE 513


>29635.m000466 conserved hypothetical protein
          Length = 545

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/49 (69%), Positives = 43/49 (87%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVTTRDD 49
           K+GI ++GLTIQAQK EELPEQVLCC+RLN+IDFV+HG IPT++   D+
Sbjct: 497 KNGILDLGLTIQAQKQEELPEQVLCCLRLNRIDFVDHGHIPTLMKLEDN 545


>29736.m002073 conserved hypothetical protein
          Length = 512

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 4   IANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           I +VGLTIQ  K EELPEQ+LCCVRLN ID++N+ Q+
Sbjct: 464 ILDVGLTIQGNKAEELPEQILCCVRLNGIDYMNYHQL 500


>29822.m003437 conserved hypothetical protein
          Length = 483

 Score = 51.2 bits (121), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 4   IANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           + + GLTIQ  K E+LPE +LCC+RLN++D+  H Q+
Sbjct: 445 VLDFGLTIQGHKAEDLPEHMLCCMRLNELDYAKHQQL 481