Jatropha Genome Database

JcCB0018211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018211.10 + phase: 0 /partial
         (374 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28838.m000254 starch synthase, putative                               172   2e-43
29866.m000609 starch synthase, putative                               144   9e-35
30068.m002598 starch synthase, putative                                87   2e-17
29693.m002052 starch synthase, putative                                69   4e-12
30024.m001701 conserved hypothetical protein                           62   7e-10
29842.m003588 starch synthase, putative                                61   9e-10

>28838.m000254 starch synthase, putative
          Length = 754

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/240 (42%), Positives = 134/240 (55%), Gaps = 20/240 (8%)

Query: 136 SIVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLN 195
           +++ V+AE AP+SKTGGLGDV GSLP ALA RGHRVMVV+PRY        N     D+ 
Sbjct: 264 NVILVSAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRY-------GNYAETQDIG 316

Query: 196 CRVKVYCFGGAQEVSFFHEYREGVDWVFVDHPSY-HRPGNPYGDGRGAFGDNQFRFTVLC 254
            R +    G   EV++F  + +GVD+VF++ P + H   N YG  R    D   R  + C
Sbjct: 317 VRKRYKVDGQDFEVTYFQAFIDGVDFVFIECPMFRHIESNIYGGNR---VDILKRMVLFC 373

Query: 255 HAACEAPLVLPLGGYTYGEKCL-FLANDWHASLVPVLLAAKYHPFGVYKDARSVLVIHNL 313
            AA E P  +P GG  YG+  L F+ANDWH +L+PV L A Y   G+ +  RSVLVIHN+
Sbjct: 374 KAAIEVPWHVPCGGICYGDGNLVFIANDWHTALLPVYLRAYYRDNGLMQFTRSVLVIHNI 433

Query: 314 AHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVS 373
           AHQG  P   +    LP  +    +   P          G+  NI    + TADR++TVS
Sbjct: 434 AHQGRGPMDDFVYTDLPEHYIDLFKLYDPV--------GGDHFNIFAAGLKTADRVVTVS 485


>29866.m000609 starch synthase, putative
          Length = 624

 Score =  144 bits (362), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 136/257 (52%), Gaps = 30/257 (11%)

Query: 133 VKHSIVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAV 192
           V  +++FV  E  P+SKTGGLGDV G LP A+A+ GHRVM +SPRY           +A 
Sbjct: 78  VGMNLIFVGTEVGPWSKTGGLGDVLGGLPPAMAANGHRVMTISPRY-------DQYKDAW 130

Query: 193 DLNCRVKVYCFGGAQEVSFFH-EYREGVDWVFVDHPSYHRP------GNPYGDGRG-AFG 244
           D N  V+V      + V +FH  Y+ GVD VFVDHP +            YG   G  + 
Sbjct: 131 DTNFVVQVKVGDRIETVRYFHCCYKRGVDRVFVDHPMFLEKIWGKTGSKLYGPQAGDDYE 190

Query: 245 DNQFRFTVLCHAACEAPLVLPLGGYT-----YGEKCLFLANDWHASLVPVLLAAKYHPFG 299
           DNQ RF++ C AA EAP +L L         YGE  +F+ANDWH +LVP  L + Y   G
Sbjct: 191 DNQLRFSLFCQAAIEAPRLLSLNTSKYFSGPYGEDVIFIANDWHTALVPCYLKSIYKARG 250

Query: 300 VYKDARSVLVIHNLAHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALD---TGEAV 356
           +YK+A+    IHN+A+QG      +    LP ++  + +++          D    G  +
Sbjct: 251 IYKNAKVAFCIHNIAYQGRFAIADFSLLNLPDQFKRSFDFI-------DGYDKPVKGRKI 303

Query: 357 NILKGAIVTADRILTVS 373
           N +K  I  +DR++TVS
Sbjct: 304 NWMKAGISESDRVVTVS 320


>30068.m002598 starch synthase, putative
          Length = 526

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 106/248 (42%), Gaps = 74/248 (29%)

Query: 136 SIVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLN 195
           ++VFV AE  P+SKTGGLGDV G LP ALA+RGHRVM VSPRY           +A D  
Sbjct: 80  NLVFVGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTVSPRY-------DQYKDAWDTC 132

Query: 196 CRVKVYCFGGAQEVSFFHEYREGVDWVFVDHPSYHRP------GNPYGDGRGA-FGDNQF 248
             V++      + + FFH Y+ GVD VFVDHP +            YG   G  + DNQ 
Sbjct: 133 VLVEITVGDRVETIRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPTAGLDYKDNQL 192

Query: 249 RFTVLCHAACEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHPFGVYKDARSVL 308
           RF++LC  A                                                   
Sbjct: 193 RFSLLCLVA--------------------------------------------------F 202

Query: 309 VIHNLAHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALD---TGEAVNILKGAIVT 365
            IHN+A+QG      +    LP ++  + +++          D    G  +N +K  ++ 
Sbjct: 203 CIHNIAYQGRFAFSDFSLLNLPDQFKSSFDFI-------DGYDKPVNGRKINWMKAGVLE 255

Query: 366 ADRILTVS 373
           +DR+LTVS
Sbjct: 256 SDRVLTVS 263


>29693.m002052 starch synthase, putative
          Length = 998

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 24/240 (10%)

Query: 137 IVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLNC 196
           ++ + AE AP +K GGLGDV   L  AL  RGH V ++ P+Y     Q   + N   L+ 
Sbjct: 502 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKRGHLVEIILPKY--DCMQYNGIGNLRALDV 559

Query: 197 RVKVYCFGGAQEVSFFHEYREGVDWVFVD--HP-SYHRPGNPYGDGRGAFGDNQFRFTVL 253
            V+ Y  G   +   +    EG+   F++  HP  +   G  YG+      D+  RF+  
Sbjct: 560 TVESYFDGKLYKNKIWVGTIEGLPVYFIEPHHPDKFFWRGQFYGE-----HDDFKRFSFF 614

Query: 254 CHAACEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHPFGVYKDARSVLVIHNL 313
             AA E   +L   G    +  +  ++DW  + V  L    Y P G+   AR     HN 
Sbjct: 615 SRAALE---LLHQSG---KKPDIIHSHDWQTAFVAPLYWDLYAPKGL-NSARICFTCHNF 667

Query: 314 AHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVS 373
            +QG  PA    + GL        + +    A        + +N +KGA+V ++ + TVS
Sbjct: 668 EYQGTAPASELASCGLDVHHLNRPDRMQDNLAH-------DRINPVKGAVVFSNIVTTVS 720


>30024.m001701 conserved hypothetical protein
          Length = 103

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 1   MASLHICRTPSCQSFLKSENKRRSFSSVVHADLG--HLWKVRSKNVSLMLVRSVG-GGIQ 57
           M SL I     CQSF K  N   SFS + +A LG  +L   R KNVSL +VRS   GG+ 
Sbjct: 1   MESLWITHQRFCQSFPKLINAHHSFSPISNAQLGFTYLLTERCKNVSLSVVRSDNRGGLA 60

Query: 58  SSQDEFSAIXXXXXXXXXXXXALVLGAETDESGSVIGFNLISQS 101
           +S +  SA+              +L A+ DESGS IGFNLISQS
Sbjct: 61  NSPEGSSAVEDVKEEKGGH----MLAADRDESGSAIGFNLISQS 100


>29842.m003588 starch synthase, putative
          Length = 1095

 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 24/180 (13%)

Query: 137 IVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLNC 196
           IV V  E AP +K GGLGDV  SL  A+    H V ++ P+Y        NL +  D++ 
Sbjct: 649 IVHVAVEMAPIAKVGGLGDVVTSLSRAVQDLNHSVDIILPKY-----DCMNLTHVKDIHY 703

Query: 197 RVKVYCFGGAQEVSFFHEYREGVDWVFVDHPSYHRPGNPY---GDGRGAFGDNQFRFTVL 253
           + K Y +GG  E+  +    EG+   F++      P N     G   G   D + RF   
Sbjct: 704 Q-KSYSWGGT-EIKVWFGKVEGLSVYFLE------PQNGMFWTGCIYGCRNDGE-RFGFF 754

Query: 254 CHAACEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHPFGVYKDARSVLVIHNL 313
           CHAA E    L   G+      +   +DW ++ V  L    Y  +G+ K AR V  IHNL
Sbjct: 755 CHAALE---FLQQSGF---HPDIIHCHDWSSAPVAWLFKDHYMHYGLSK-ARVVFTIHNL 807