Jatropha Genome Database

JcCB0018201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018201.10 - phase: 0 /pseudo
         (349 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29620.m000548 Lipid-A-disaccharide synthase, putative                 256   1e-68
34198.m000022 Lipid-A-disaccharide synthase, putative                  56   2e-08

>29620.m000548 Lipid-A-disaccharide synthase, putative
          Length = 469

 Score =  256 bits (654), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 147/175 (84%)

Query: 175 LAPNQLVEDYIKAFVHKWPVPAIVVPGGHPRMKYDAFNASTVALCTSGTVAVELQLARLP 234
           +APN  VE+YI+  V KWPVP+I++PG    MKYDA +AS++ALCTSGTVA+ELQLARLP
Sbjct: 295 VAPNLHVENYIRDSVRKWPVPSILIPGAIRHMKYDALSASSIALCTSGTVALELQLARLP 354

Query: 235 CVVAYRAHLLTESFIQYKAKIPYISLPNILMDSAIIPEALFHACTPTNLASLLKELMHNK 294
           CVVAYRAHLLTE  I+YKAKIPYISLPNILMDSAIIPEALF ACTP NLASLL EL+H+ 
Sbjct: 355 CVVAYRAHLLTEWIIRYKAKIPYISLPNILMDSAIIPEALFQACTPRNLASLLLELIHDT 414

Query: 295 ELQEKQIVAAEKVISLLFPSERIIYNSAEQVKERSFSSFSPSIMAASTILWHVKP 349
            LQEKQIVAA KVISLL+PSER I N  EQ  E SF S +PS++AA+TIL HVKP
Sbjct: 415 GLQEKQIVAANKVISLLYPSERNISNLTEQGTESSFVSCTPSMIAAATILRHVKP 469


>34198.m000022 Lipid-A-disaccharide synthase, putative
          Length = 219

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 202 GHPRMKYDAFNASTVALCTSGTVAVELQLARLPCVVAYRAHLLTESFIQYKAKIPYISLP 261
           GH    +DA  A+   L  SGT  +E  L + P V+ Y+   ++   ++     PY+ LP
Sbjct: 95  GHA---HDAMTAADAVLVASGTATLEAALLKKPMVITYKMSNMSWQLLKRMRLQPYVGLP 151

Query: 262 NILMDSAIIPEALFHACTPTNLASLLKELMHNKE----LQEK 299
           NIL    I+PE L    TP  +A  L  L+ +K     LQEK
Sbjct: 152 NILAGEFIVPELLQKEATPEGVAQTLYNLLADKTGLAVLQEK 193