Jatropha Genome Database

JcCB0017941.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017941.20 - phase: 0 
         (115 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008847 50S ribosomal protein L18, putative                     216   2e-57
29844.m003287 structural constituent of ribosome, putative             64   2e-11
27797.m000015 structural constituent of ribosome, putative             63   2e-11
29589.m001233 conserved hypothetical protein                           55   5e-09
29967.m000086 structural constituent of ribosome, putative             53   4e-08
30190.m010785 50S ribosomal protein L18, chloroplast precursor, ...    45   9e-06

>30128.m008847 50S ribosomal protein L18, putative
          Length = 115

 Score =  216 bits (550), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/115 (90%), Positives = 111/115 (96%)

Query: 1   MVIPPPVKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMEN 60
           MVIPPPVKWPPRV ++LKPYVLKMHFTNK+VSAQVIHSP+ATVACSASSQEKALR SMEN
Sbjct: 1   MVIPPPVKWPPRVADFLKPYVLKMHFTNKFVSAQVIHSPSATVACSASSQEKALRPSMEN 60

Query: 61  TRDVAAAAKIGKILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKLL 115
           TRDVAAAAKIGKIL ERLLVK IPA+SVFLKREQKYHGKVKAVVD+VR+SGVKLL
Sbjct: 61  TRDVAAAAKIGKILGERLLVKGIPAISVFLKREQKYHGKVKAVVDSVRESGVKLL 115


>29844.m003287 structural constituent of ribosome, putative
          Length = 140

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 58/99 (58%)

Query: 16  YLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRDVAAAAKIGKILA 75
           Y +P+ L ++ +   V A VIH  T+ V   A S  K L+  + +TR+VAA A +G +LA
Sbjct: 24  YHEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDLKFDLSSTRNVAACATVGAVLA 83

Query: 76  ERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
           +R L  DI  V    ++ +K  GK++ V+ ++ D+G+ +
Sbjct: 84  QRALADDIHDVIYTQRKGEKLEGKLQIVLQSIVDNGINV 122


>27797.m000015 structural constituent of ribosome, putative
          Length = 188

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 60/108 (55%)

Query: 7   VKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRDVAA 66
           + +  R   Y++P+ L +  + ++VSA + H  T+     A +  K +++++ +  D+ A
Sbjct: 76  MSFKQRTKAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAALRSRSDIPA 135

Query: 67  AAKIGKILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
              IG+IL+ER    D+   S   +   K+ GK++AVV ++ D+G+ +
Sbjct: 136 CLAIGRILSERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDI 183


>29589.m001233 conserved hypothetical protein
          Length = 129

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 66/111 (59%), Gaps = 12/111 (10%)

Query: 17  LKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTR--DVAAAAKIGKIL 74
           LK YVL+M  + KY++A V+      +  +AS+ E ++++++E  R  +  AAA +G++L
Sbjct: 4   LKRYVLRMFISLKYITANVVDRNNGRIVATASTVEHSIKNTLECGRSCNAKAAAIVGEVL 63

Query: 75  AERLLVKDIP-----AVSVFLKREQKYHG-----KVKAVVDAVRDSGVKLL 115
           A RL V+ +       + V   +E +  G     K+ A+++A+R++GVK++
Sbjct: 64  AMRLKVEGLEQGQGRGIHVDANKEVEKKGFKNRTKIWAIINALRNNGVKVI 114


>29967.m000086 structural constituent of ribosome, putative
          Length = 186

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 49/84 (58%)

Query: 4   PPPVKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRD 63
           P    W  R   Y++P++L + F+ +++ A+V+H  T+ V   A++  K LR+++ +  D
Sbjct: 83  PNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSKVISVATTNAKDLRNTLPSLTD 142

Query: 64  VAAAAKIGKILAERLLVKDIPAVS 87
             A   +G+++AER    D+ A++
Sbjct: 143 HDACRVVGRLIAERSKEADVYAIA 166


>30190.m010785 50S ribosomal protein L18, chloroplast precursor,
           putative
          Length = 164

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 22  LKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRD--VAAAAKIGKILAERLL 79
           L +  +NK++  QVI         SAS+ +K +    + +    +  A K+G+++A+  L
Sbjct: 71  LSVFRSNKHLYVQVIDDSKMHTLASASTMQKPISEEFDYSSGPTLEVAKKVGEVIAKSCL 130

Query: 80  VKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
            K I  V+ F +    YHG+++A+ DA R++G++ 
Sbjct: 131 EKGITKVA-FDRGGYPYHGRIEALADAARENGLQF 164