Jatropha Genome Database

JcCB0017171.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017171.20 + phase: 2 /pseudo/partial
         (184 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004476 Cyclic nucleotide-gated ion channel, putative           275   6e-75
28863.m000089 Cyclic nucleotide-gated ion channel, putative           189   5e-49
30147.m013975 Cyclic nucleotide-gated ion channel, putative           163   5e-41
29822.m003360 Cyclic nucleotide-gated ion channel, putative           157   2e-39
30131.m006865 Cyclic nucleotide-gated ion channel, putative           140   3e-34
30078.m002324 Cyclic nucleotide-gated ion channel, putative           140   5e-34
30169.m006518 Cyclic nucleotide-gated ion channel, putative           134   4e-32
29687.m000571 Cyclic nucleotide-gated ion channel, putative           132   9e-32
30051.m000527 Cyclic nucleotide-gated ion channel, putative           112   9e-26
28124.m000232 Cyclic nucleotide-gated ion channel, putative            97   4e-21
27538.m000318 Cyclic nucleotide-gated ion channel, putative            84   3e-17
30027.m000817 Cyclic nucleotide-gated ion channel, putative            70   5e-13

>29848.m004476 Cyclic nucleotide-gated ion channel, putative
          Length = 629

 Score =  275 bits (704), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 133/176 (75%), Positives = 145/176 (82%), Gaps = 4/176 (2%)

Query: 1   FNENHQTGKPFSVYKIP----KTEGGVSDPKTGYKIPKFGRFKLFPENHESRRKRILDPG 56
           FNE     KP  +Y +     K EG  SDPKTG+K PK GRFK+FPENHE  RKRILDPG
Sbjct: 11  FNEIQHLEKPLPLYTVSGQLLKAEGSASDPKTGHKFPKLGRFKVFPENHEPWRKRILDPG 70

Query: 57  SDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFRTFADII 116
           +DV+LQWNRVFLFSCLVALFVDPLFFYLP+V   G TSCM  DLNLGITVTCFRTFADI 
Sbjct: 71  TDVYLQWNRVFLFSCLVALFVDPLFFYLPSVANRGVTSCMDTDLNLGITVTCFRTFADIF 130

Query: 117 YILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLPQVL 172
           YILH+VVKFRTAYVAPSSRVFGRGELV+D  KI+ RY KSDFFIDLIAALPLPQ++
Sbjct: 131 YILHLVVKFRTAYVAPSSRVFGRGELVVDPKKISWRYFKSDFFIDLIAALPLPQIV 186


>28863.m000089 Cyclic nucleotide-gated ion channel, putative
          Length = 396

 Score =  189 bits (481), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 89/139 (64%), Positives = 112/139 (80%)

Query: 34  KFGRFKLFPENHESRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGAT 93
           K GR K+ P ++     +ILDPGSD+ L+WNR+FL SCL+ALFVDPL+FYLPTV  + A+
Sbjct: 61  KVGRSKVVPTDNPPWHHKILDPGSDIVLRWNRIFLVSCLLALFVDPLYFYLPTVGGNAAS 120

Query: 94  SCMHVDLNLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRY 153
           SC++ D  L I  T FRT AD+ Y+LH+V+KFRTAYVAP++RVFGRGELVMD  KIA+RY
Sbjct: 121 SCVNTDFKLRIVATFFRTIADLFYLLHMVIKFRTAYVAPNTRVFGRGELVMDPKKIAQRY 180

Query: 154 LKSDFFIDLIAALPLPQVL 172
           +KSDF IDLIA LPLPQ++
Sbjct: 181 MKSDFCIDLIATLPLPQIV 199


>30147.m013975 Cyclic nucleotide-gated ion channel, putative
          Length = 680

 Score =  163 bits (412), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 102/142 (71%), Gaps = 8/142 (5%)

Query: 36  GRFKLFPENHESRRK-----RILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRH 90
            RF+ FP     R+K     +ILDPGSD   +WN +FL +C++ALF+DPL+FYLP +   
Sbjct: 10  ARFRHFPTRFSLRKKVSWWNQILDPGSDFVNKWNHIFLVTCMIALFLDPLYFYLPII--- 66

Query: 91  GATSCMHVDLNLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIA 150
           G  +CM +D+ LGI VT  RT  D+ + +H+V+KFRTA+VAPSSRVFGRGELVMD   IA
Sbjct: 67  GGDACMDIDITLGIWVTFARTVTDLFFFMHVVIKFRTAFVAPSSRVFGRGELVMDPKAIA 126

Query: 151 RRYLKSDFFIDLIAALPLPQVL 172
            RYLKS F +DL AALPLPQ +
Sbjct: 127 VRYLKSQFAVDLFAALPLPQTI 148


>29822.m003360 Cyclic nucleotide-gated ion channel, putative
          Length = 654

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 100/131 (76%), Gaps = 7/131 (5%)

Query: 51  RILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFR 110
           +ILDP SD+   WN VFL + +VALFVDPLFF+LP     G   C+  D +L + +T FR
Sbjct: 47  QILDPDSDIVTYWNYVFLITSIVALFVDPLFFFLPYADADGV--CLTNDASLAVLITYFR 104

Query: 111 TFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLPQ 170
           +FAD+ ++LHI++KFRTA+VAP+SRVFGRGELVMD  +IARRYL+SDF IDL AALPLPQ
Sbjct: 105 SFADLFFLLHIIMKFRTAFVAPNSRVFGRGELVMDAKEIARRYLRSDFVIDLAAALPLPQ 164

Query: 171 VLFLTGFIWIM 181
           V+     IW++
Sbjct: 165 VV-----IWVV 170


>30131.m006865 Cyclic nucleotide-gated ion channel, putative
          Length = 1005

 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 92/133 (69%), Gaps = 2/133 (1%)

Query: 40  LFPENHESRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVD 99
           +FPE+ +   K I DP     L WNR+F+ SC++A+ VDPLFFYLP  + +    C+ +D
Sbjct: 87  VFPEDLKVSEKMIFDPQDKSLLLWNRLFVISCILAVSVDPLFFYLP--VFNYKMVCLGMD 144

Query: 100 LNLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFF 159
            NL  T+T  RT  D  Y+L + ++FRTAYVAPSSRVFGRGELV+D  +IA RYL+  F 
Sbjct: 145 TNLAATITAVRTMLDAFYLLRMTLQFRTAYVAPSSRVFGRGELVIDSGQIAARYLRHYFI 204

Query: 160 IDLIAALPLPQVL 172
           +D +A LPLPQ++
Sbjct: 205 VDFLAVLPLPQMV 217


>30078.m002324 Cyclic nucleotide-gated ion channel, putative
          Length = 347

 Score =  140 bits (352), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/152 (48%), Positives = 101/152 (66%), Gaps = 6/152 (3%)

Query: 24  SDPKTGYK-IPKFGRFKLFPENHE--SRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPL 80
           SD  +G K +P+    ++F E++E  +    ILDP   +   WN +F  +CL +LF+DPL
Sbjct: 32  SDKVSGCKNLPRKVLSRVFSEDYEYDAADSMILDPRGPLIQTWNEIFFAACLTSLFIDPL 91

Query: 81  FFYLPTVIRHGATSCMHVDLNLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRG 140
           FF LP V       C+HV + L    T  R+ AD++YI+HI V+FR AYVAPSSRVFGRG
Sbjct: 92  FFLLPQV---KEDICIHVSIPLEAAFTVIRSLADLVYIIHISVRFRMAYVAPSSRVFGRG 148

Query: 141 ELVMDLDKIARRYLKSDFFIDLIAALPLPQVL 172
           ELV++  KIA RYL  DF++D++ ALP+PQ+L
Sbjct: 149 ELVVNPSKIASRYLHRDFWLDILVALPVPQLL 180


>30169.m006518 Cyclic nucleotide-gated ion channel, putative
          Length = 838

 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 87/124 (70%), Gaps = 2/124 (1%)

Query: 51  RILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFR 110
           +ILDP      +WN++F+ SCL+A+ +DPLFFY+P +  +    C+ +D  + I  +  R
Sbjct: 82  KILDPQGPFLQRWNKIFVLSCLIAVSLDPLFFYVPVI--NDIEKCLGLDSRMEIVASVLR 139

Query: 111 TFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLPQ 170
            F DI YI+HI+ +FRT ++APSSRVFGRG LV D  +IA+RYL S F ID++A LPLPQ
Sbjct: 140 WFTDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDTWEIAKRYLSSYFLIDILAVLPLPQ 199

Query: 171 VLFL 174
           V+ L
Sbjct: 200 VVIL 203


>29687.m000571 Cyclic nucleotide-gated ion channel, putative
          Length = 735

 Score =  132 bits (332), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 90/133 (67%), Gaps = 2/133 (1%)

Query: 40  LFPENHESRRKRILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVD 99
           +FPE+ +   K+I DP     L  NR+F+ SC++ + VDPLFFYLP  + +    C+ +D
Sbjct: 88  VFPEDLKVSEKKIFDPQDKFLLLCNRLFVISCILGVSVDPLFFYLP--VFNDPAHCLGID 145

Query: 100 LNLGITVTCFRTFADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFF 159
             L I  T  RT  D  Y++ + ++FRTAY+APSSRVFGRGELV+D  +IA+RYL+  F 
Sbjct: 146 RKLAIIATTLRTVIDAFYLIRMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRQYFI 205

Query: 160 IDLIAALPLPQVL 172
           ID ++ LPLPQ++
Sbjct: 206 IDFLSVLPLPQIV 218


>30051.m000527 Cyclic nucleotide-gated ion channel, putative
          Length = 778

 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 80/123 (65%), Gaps = 2/123 (1%)

Query: 52  ILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFRT 111
           +++P + V  QWN+  +  CLVA+FVDPLFF++ +V +     C+ ++  L  T+  FR+
Sbjct: 197 VMNPHTKVVQQWNKFCVICCLVAIFVDPLFFFMLSVQQE--NKCIVINWPLTTTIIVFRS 254

Query: 112 FADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLPQV 171
             D IY+L+I+++FR AY+AP SRV G GELV    KIA  YL   F +DL   LPLPQ+
Sbjct: 255 MTDFIYLLNILLQFRLAYIAPESRVVGAGELVDHPKKIAMNYLCGYFLVDLFIMLPLPQI 314

Query: 172 LFL 174
           + L
Sbjct: 315 IIL 317


>28124.m000232 Cyclic nucleotide-gated ion channel, putative
          Length = 715

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 3/124 (2%)

Query: 52  ILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFRT 111
           +LDP S    +WNR FL +  +AL +DPLFFY  ++ R GA  C+++D  L   VT  RT
Sbjct: 111 VLDPRSKRVQKWNRAFLLARGMALAIDPLFFYSLSIGRGGA-PCLYMDGGLAAIVTVLRT 169

Query: 112 FADIIYILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKS--DFFIDLIAALPLP 169
             D I++ H+ ++FR AYV+  S V G G+LV D   IA  Y++S   F+ D    LP+P
Sbjct: 170 CVDAIHLCHLWLQFRLAYVSRESLVVGCGKLVWDARAIASHYVRSLKGFWFDAFVILPVP 229

Query: 170 QVLF 173
           Q +F
Sbjct: 230 QAVF 233


>27538.m000318 Cyclic nucleotide-gated ion channel, putative
          Length = 518

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 49/55 (89%)

Query: 118 ILHIVVKFRTAYVAPSSRVFGRGELVMDLDKIARRYLKSDFFIDLIAALPLPQVL 172
           ++ I ++FRTAYVAPSSRVFGRGELV+D  KIA +YL++ F+IDL+AALPLPQVL
Sbjct: 1   MIQIFIRFRTAYVAPSSRVFGRGELVIDSKKIAVKYLQTHFWIDLVAALPLPQVL 55


>30027.m000817 Cyclic nucleotide-gated ion channel, putative
          Length = 687

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 12/132 (9%)

Query: 51  RILDPGSDVFLQWNRVFLFSCLVALFVDPLFFYLPTVIRHGATSCMHVDLNLGITVTCFR 110
           ++LDP +    +WNR FL  C   LFVDPLFFY  +V       C+ +D    +TVT  R
Sbjct: 70  QVLDPRAKWVQEWNRGFLLVCATGLFVDPLFFYALSV--SDTCMCLFIDGWFALTVTALR 127

Query: 111 TFADIIYILHIVVKFRTAYVAPSSRVFG-------RGELVMDLDKIARRYLKSD--FFID 161
              D +++ ++ ++ + A   PS             G        +A RYLK+   FF D
Sbjct: 128 CMTDALHVWNMWLQLKMAK-KPSIGGGIGGDYGDRSGPRFSSPSSVALRYLKAKKGFFFD 186

Query: 162 LIAALPLPQVLF 173
           L   LPLPQ++ 
Sbjct: 187 LFVILPLPQIIL 198