Jatropha Genome Database

JcCB0017171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017171.10 + phase: 0 /TE
         (205 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28610.m000073 arginine/serine-rich splicing factor, putative          153   4e-38
29848.m004475 arginine/serine-rich splicing factor, putative          153   7e-38
30128.m008840 arginine/serine-rich splicing factor, putative           65   2e-11
29986.m001610 arginine/serine-rich splicing factor, putative           62   2e-10
29805.m001527 arginine/serine-rich splicing factor, putative           60   7e-10
29745.m000366 RNA binding motif protein, putative                      59   2e-09
29827.m002610 arginine/serine-rich splicing factor, putative           57   5e-09
28462.m000127 glycine-rich RNA-binding protein, putative               55   2e-08
30128.m008837 arginine/serine-rich splicing factor, putative           52   3e-07

>28610.m000073 arginine/serine-rich splicing factor, putative
          Length = 184

 Score =  153 bits (387), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 84/109 (77%), Gaps = 4/109 (3%)

Query: 1   MSRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDG 60
           M+RVYVGNLD RV+ER+LEDEFR +GV+RSVWVARRPPGYAF++FDD+RDA DAI  LDG
Sbjct: 1   MARVYVGNLDPRVSERDLEDEFRMYGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60

Query: 61  KNGWRVELSHNSX----XXXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
           KNGWRVELSHNS                    D+KCYECGEPGHFAREC
Sbjct: 61  KNGWRVELSHNSKGGGGRGGGSGGGGRGRGGEDMKCYECGEPGHFAREC 109


>29848.m004475 arginine/serine-rich splicing factor, putative
          Length = 179

 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 89/105 (84%)

Query: 1   MSRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDG 60
           MSRVYVGNLD RVTER+LEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDA+DAIHELDG
Sbjct: 1   MSRVYVGNLDPRVTERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDADDAIHELDG 60

Query: 61  KNGWRVELSHNSXXXXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
           KNGWRVELSHNS               SDLKCYECGEPGHFAREC
Sbjct: 61  KNGWRVELSHNSRGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 105


>30128.m008840 arginine/serine-rich splicing factor, putative
          Length = 300

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 6/73 (8%)

Query: 4   VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
           +YVGNL   + +RE++D F ++G I  V   +  RPPGYAF++F+D RDAEDAI   DG 
Sbjct: 46  LYVGNLPGDIRQREVKDLFYKYGPIVEVDLKIPPRPPGYAFVEFEDARDAEDAIRGRDGY 105

Query: 62  N----GWRVELSH 70
           N      RVEL+H
Sbjct: 106 NFDGCRLRVELAH 118


>29986.m001610 arginine/serine-rich splicing factor, putative
          Length = 292

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 6/74 (8%)

Query: 4  VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
          +YVGNL   + ERE+ED F ++G I  +   +  RPPGYAF++F++ RDAEDAI   DG 
Sbjct: 9  LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68

Query: 62 N----GWRVELSHN 71
          +      RVEL+H 
Sbjct: 69 DFDGHQLRVELAHG 82


>29805.m001527 arginine/serine-rich splicing factor, putative
          Length = 305

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 8/108 (7%)

Query: 2   SRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
           +R+YVG+L +R   R+LE  F ++G +R V + R    YAF++F D RDA+DA + LDGK
Sbjct: 11  TRLYVGHLASRTRSRDLEYLFSKYGRVRDVDMKR---DYAFVEFSDPRDADDARYHLDGK 67

Query: 62  --NGWR--VELSHNSXXXXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
             +G R  VE +                  S  +C+ CG  GH+AR+C
Sbjct: 68  DLDGSRIIVEFAKGVPRGSREYLGRGPPPGS-GRCFNCGIDGHWARDC 114


>29745.m000366 RNA binding motif protein, putative
          Length = 217

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 2   SRVYVGNLDARVTERELEDEFRRFGVIRSVWV-----ARRPPGYAFIDFDDKRDAEDAIH 56
           S VYV NLD  +T  +L   F  FG I  V V     +R+  G AFI F  + DA  A  
Sbjct: 51  STVYVSNLDYSLTNSDLHTLFSTFGKIARVTVLKDKQSRQSKGVAFIQFVSRDDAVSAAK 110

Query: 57  ELDGK--NGWRVELSHNSXXXXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
           ++D K  NG  +  S  S                  +CYECGE GH + EC
Sbjct: 111 QMDKKILNGRTLSASIASDNGRAAEFIKKRVYKDKSRCYECGEIGHLSYEC 161


>29827.m002610 arginine/serine-rich splicing factor, putative
          Length = 264

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 4  VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
          +YVGNL + + E E+ED F ++G I  +   +  RPP Y F++F++ RDAEDAI   DG 
Sbjct: 9  IYVGNLPSDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENTRDAEDAIRGRDGY 68

Query: 62 N----GWRVELSH 70
          N      RVEL+H
Sbjct: 69 NFDGCRLRVELAH 81


>28462.m000127 glycine-rich RNA-binding protein, putative
          Length = 276

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 23/127 (18%)

Query: 2   SRVYVGNLDARVTERELEDEFRRFGVIRSVWV-----ARRPPGYAFIDFDDKRDAEDAIH 56
           +R++VG L   VTER+LE+ F R+G I    V       RP G+ FI F D+R  +DAI 
Sbjct: 7   NRIFVGGLSWDVTERQLENAFNRYGKIVECQVMLERDTGRPRGFGFITFSDRRSMDDAIR 66

Query: 57  ELDGKN-GWRV------------ELSHNSXXXXXXXXXXXXXXXSDL-----KCYECGEP 98
           E+ G+  G RV            +L H                  D      +C++CG  
Sbjct: 67  EMHGREFGDRVISVNKAQPKMGDDLDHGYRGGYSSSGGRGGGYGGDRPLGQDECFKCGRI 126

Query: 99  GHFAREC 105
           GH+AR+C
Sbjct: 127 GHWARDC 133


>30128.m008837 arginine/serine-rich splicing factor, putative
          Length = 444

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 4  VYVGNLDARVTERELEDEFRRFGVIRSVWVARRP--PGYAFIDFDDKRDAEDAIHELDGK 61
          +YVGNL   +  RE++D F ++G+I  V +   P  PGYAF+ F+D  +AE+AI   DG 
Sbjct: 9  LYVGNLPGDIRWREVKDLFYKYGLIVRVDLRNPPRTPGYAFVQFEDACNAEEAIRGRDGY 68

Query: 62 N----GWRVELSH 70
          N      RVEL++
Sbjct: 69 NFNGCRLRVELAY 81