Jatropha Genome Database

JcCB0016411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016411.10 - phase: 0 /partial
         (315 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30075.m001173 GTP-dependent nucleic acid-binding protein engD, p...   533   e-152
30169.m006362 GTP-binding protein, putative                           194   6e-50

>30075.m001173 GTP-dependent nucleic acid-binding protein engD,
           putative
          Length = 394

 Score =  533 bits (1373), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/289 (87%), Positives = 275/289 (95%)

Query: 27  DFMYLIDKSNTRVSAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD 86
           D++  + K  + VSAFLEIHDIAGLVRGAH+GQGLGN+FLSHIRAVDGIFHVLRAFEDPD
Sbjct: 74  DWLCQLYKPKSEVSAFLEIHDIAGLVRGAHQGQGLGNNFLSHIRAVDGIFHVLRAFEDPD 133

Query: 87  IIHVDDSVDPVRDLEVIGAELRLKDLEFIERRIEDIEKSMKRSNDKQLKIEHEMCQKVKA 146
           IIHVDDSVDPVRDLEVIGAELRLKDLEF+ RRIED+EKSMKRSNDKQLKIE E+CQ+VKA
Sbjct: 134 IIHVDDSVDPVRDLEVIGAELRLKDLEFMARRIEDLEKSMKRSNDKQLKIELELCQRVKA 193

Query: 147 WLEDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQE 206
           WLED KDVRLGDWKAA+IEI+NTFQLLTAKPVVYLVNMNE+DYQRKKNKFLPKIHAW+QE
Sbjct: 194 WLEDEKDVRLGDWKAAEIEIMNTFQLLTAKPVVYLVNMNERDYQRKKNKFLPKIHAWLQE 253

Query: 207 HGGETIIPFSAAFERNLADMTPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 266
           HGGETIIPFS   E+NLAD++PDEA KYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD
Sbjct: 254 HGGETIIPFSCVLEQNLADISPDEATKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 313

Query: 267 EVKCWQIRRQSKAPQAAGTIHSDFERGFICAEVMKFEDLKELGSESAVK 315
           EVKCWQIRRQ+KAPQAAG IH+DFE+GFICAEVMKFEDLKELGSE+AVK
Sbjct: 314 EVKCWQIRRQTKAPQAAGAIHTDFEKGFICAEVMKFEDLKELGSEAAVK 362


>30169.m006362 GTP-binding protein, putative
          Length = 417

 Score =  194 bits (492), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 164/290 (56%), Gaps = 9/290 (3%)

Query: 32  IDKSNTRVSAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVD 91
           + KS   V A +E  DIAGLV+GA +G+GLGN FLSHIR VD I  V+R FED DI+HV 
Sbjct: 105 LSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVS 164

Query: 92  DSVDPVRDLEVIGAELRLKDLEFIERRIEDIEKSMKRSNDKQLKIEHE--MCQKVKAWLE 149
             VDP  D++VI  EL   DL+ IE+R+E ++K   + +  +LK E E    ++++  L 
Sbjct: 165 GKVDPKSDIDVINLELVFSDLDQIEKRLEKLKKGKAKDSQSKLKEEAEKSALERIQGALM 224

Query: 150 DGKDVR---LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQE 206
           DGK  R   L D++   I+ L    LLT KPV+Y+ N+ E D     N    K    +  
Sbjct: 225 DGKPARSVALSDFEKDAIKHLC---LLTMKPVIYVANVAESDLAVPDNNPHVKEVMNLAS 281

Query: 207 HGGETIIPFSAAFERNLADMTPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGP 265
                ++  SA  E  L ++  DE  +Y +   V +S L  +I+  ++ + L  +FT+G 
Sbjct: 282 DLQSGLVAVSAQVESELTELPVDERTEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGE 341

Query: 266 DEVKCWQIRRQSKAPQAAGTIHSDFERGFICAEVMKFEDLKELGSESAVK 315
            E K W I     APQAAG IHSDFE+GFI AE + ++D    GS +A +
Sbjct: 342 KETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAR 391