Jatropha Genome Database

JcCB0016381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016381.10 - phase: 0 
         (386 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004595 conserved hypothetical protein                          442   e-124
27394.m000353 conserved hypothetical protein                          290   7e-79

>29848.m004595 conserved hypothetical protein
          Length = 398

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/353 (66%), Positives = 279/353 (79%), Gaps = 14/353 (3%)

Query: 1   MDQT-QVKDDRSLLY-MLEALRKASKDLQNNSIFITHNPQTIMESLLNLRNEADALFSTN 58
           M+Q+ +V+D+ + L   L++L+K+SK LQN S FITHNPQ  +E+L  L  E + +FS+N
Sbjct: 1   MEQSSEVQDNNNPLSSFLQSLKKSSKHLQNKSTFITHNPQPAIEALFELHREHETIFSSN 60

Query: 59  PNLSKLCNLLFTLKTLHQKIKTSQGYSLKSLLSRQITNYKIYQVGYAIEAEVQACIDKEC 118
           P LSKL  LLFTL+TL QK K S G SLKSL+ RQI NY+IYQV +AIEAEVQACID+E 
Sbjct: 61  PKLSKLSELLFTLRTLLQKHKGSPGNSLKSLIHRQIINYRIYQVAFAIEAEVQACIDQEN 120

Query: 119 VRNLVRIIQETESDSEEDKLRVLKGFEKRLSQGFDGDFQELVLRAKGFSLLESLICDSTR 178
           V+NLV+I Q+ E+ SEE++LRVLK FE RL  GFD +FQELVLRAKGF++LESL+CDST 
Sbjct: 121 VQNLVKISQDQETVSEEERLRVLKEFENRLLLGFDSNFQELVLRAKGFTILESLLCDSTC 180

Query: 179 PMKIREQAALCVVGLVRFNRDVFVGLVLMGPIVQSLVSTASDWSIQVLCSLIRLIRTPLI 238
             +IREQAALC+VGLV FNRDVFVGLVLMGPIVQSL+S AS  SIQVLCSLIRLI+TPLI
Sbjct: 181 SKRIREQAALCIVGLVEFNRDVFVGLVLMGPIVQSLISMASGCSIQVLCSLIRLIKTPLI 240

Query: 239 DEIELEGEIPRIISLFSSQDLSIQVAAMDCVYEIAYFGRKEVIEAMIEQGLIEKLMELQR 298
           DEIEL+GEIPRIISL  SQDLSIQVAAMDC+ EIAY GRKEVIEAMIE+GLIEKLME QR
Sbjct: 241 DEIELDGEIPRIISLLRSQDLSIQVAAMDCICEIAYSGRKEVIEAMIEEGLIEKLMEFQR 300

Query: 299 STCGDDLAER--DQFNGNVSNAEVC---------AEIVKKRPFASCVARFALQ 340
           S  GD+L ++  DQ      N E+C          EIV+ RPFASCV  FA+Q
Sbjct: 301 SKFGDNLVKKATDQCTEK-RNGEMCEEDIEEEEEEEIVRNRPFASCVKTFAVQ 352


>27394.m000353 conserved hypothetical protein
          Length = 389

 Score =  290 bits (743), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 152/334 (45%), Positives = 226/334 (67%), Gaps = 8/334 (2%)

Query: 12  LLYMLEALRKASKDLQNNSIFITHNPQTIMESLLNLRNEADALFSTNPNLSKLCNLLFTL 71
           ++ +LEAL++AS DLQ++ I  + +      +LL L+ E++ + S +PNLS L   L  L
Sbjct: 13  VIKVLEALKQASHDLQSHPIPKSSDS---FRALLELQTESETILSKDPNLSTLSQHLSRL 69

Query: 72  KTLHQKIKTSQGYSLKSLLSRQITNYKIYQVGYAIEAEVQACIDKECVRNLVRIIQETES 131
           K+L   ++ S+G +L++ L+R+++ + I +V  +IE+E+QA ID+E + NL   +++  +
Sbjct: 70  KSLVDTLQKSRGRTLRNFLARRVSTHSISRVAGSIESEIQAWIDRESIDNLTAQLKKEGA 129

Query: 132 DSEEDKLRVLKGFEKRLSQGFDGDFQELVLRAKGFSLLESLICDSTRPMKIREQAALCVV 191
             E + +R+L  FE R+SQGFD + Q+L+L++K F LLE +ICDS     +REQ A  V 
Sbjct: 130 RDEPELIRLLTQFENRISQGFDRELQDLILKSKIFVLLEKIICDSNCLKSVREQCAFVVA 189

Query: 192 GLVRFNRDVFVGLVLMGPIVQSLVSTASDWSIQVLCSLIRLIRTPLIDEIELEGEIPRII 251
            L+ FN+DVFVG VLMG ++ +LVS  S  +++VLC+LI LI++PL+DEIE  GEIP+II
Sbjct: 190 ALISFNKDVFVGQVLMGSLIHALVSMVSWKAMKVLCTLINLIKSPLVDEIESNGEIPKII 249

Query: 252 SLFSSQDLSIQVAAMDCVYEIAYFGRKEVIEAMIEQGLIEKLMELQRSTCGDDLAERDQF 311
           S    +DL ++V  MDCV EI YFGRKE IEAM+++GLI+KL+ELQR   G  L + D+F
Sbjct: 250 SFLDYKDLELRVLTMDCVLEIGYFGRKEAIEAMLKEGLIKKLVELQRLELGGTLIDMDKF 309

Query: 312 NGNVSNAEVCAEIVKKR-----PFASCVARFALQ 340
           +G     E   E   +R     PFASCVARFA+Q
Sbjct: 310 DGVGGKRESTVESKDQRFSESHPFASCVARFAVQ 343