Jatropha Genome Database

JcCB0016371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016371.20 - phase: 0 
         (120 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30005.m001274 metal ion binding protein, putative                     100   3e-22
30005.m001273 conserved hypothetical protein                           83   3e-17
29337.m000219 metal ion binding protein, putative                      64   1e-11

>30005.m001274 metal ion binding protein, putative
          Length = 125

 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/121 (52%), Positives = 76/121 (62%), Gaps = 19/121 (15%)

Query: 1   MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
           M+QK+VI+VSMNG KSRSKALKI V VSGVESA+LG  DK+QIEV+G+GVDAV+L ++LR
Sbjct: 1   MKQKVVIRVSMNGQKSRSKALKIAVSVSGVESASLGGQDKSQIEVVGDGVDAVELATMLR 60

Query: 61  NKLGKKDCLTCFLSNNKTYAELVSVSPVGXXXXXXXXXX----XVQPVNWSCSYGYGVPQ 116
             +G              +AELVSVS VG               VQ + W   YG GVP 
Sbjct: 61  KNVG--------------HAELVSVSAVGEKKEEKKEEKKDDPKVQHMVWPY-YGGGVPS 105

Query: 117 Y 117
           Y
Sbjct: 106 Y 106


>30005.m001273 conserved hypothetical protein
          Length = 64

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 53/63 (84%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QK+VIKV MNG KSRSKAL+I+V   GV SA+LG+ DK+Q+ V+GEGVDAVKLT+ LR
Sbjct: 1  MKQKMVIKVEMNGDKSRSKALQIIVSSYGVTSASLGEKDKSQLVVVGEGVDAVKLTNSLR 60

Query: 61 NKL 63
           KL
Sbjct: 61 KKL 63


>29337.m000219 metal ion binding protein, putative
          Length = 119

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 15/116 (12%)

Query: 1   MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
           M++KIVIKVS    K R+KA++      GV S AL  DDK+++ VIGE VDA  LT  LR
Sbjct: 1   MKKKIVIKVSTCCEKCRTKAMQTAAVADGVNSVALEGDDKDKLVVIGEMVDAACLTKALR 60

Query: 61  NKLGKKDCLTCFLSNNKTYAELVSVSPVGXXXXXXXXXXXVQPVNWSCSYGYGVPQ 116
            K+               YAE+V+V  V             +P    C +G G P+
Sbjct: 61  KKIN--------------YAEIVTVEEVKPKPDQQKQNVEKKPTPTPCCHG-GPPR 101