Jatropha Genome Database

JcCB0014891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0014891.10 - phase: 0 /partial
         (273 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29644.m000188 transcription factor, putative                          176   8e-45
30170.m013832 WRKY transcription factor, putative                      77   8e-15
29848.m004464 WRKY transcription factor, putative                      67   8e-12

>29644.m000188 transcription factor, putative
          Length = 268

 Score =  176 bits (447), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 126/250 (50%), Positives = 145/250 (58%), Gaps = 25/250 (10%)

Query: 1   MAVELMMSY-RNENFISK-MEE-SVVQEAASGLESVNKLIRLLSQKNQEKDQXXXXXXXX 57
           MAV+LMM Y R  +F+SK MEE +VVQEAASGLESVNKLI+LLSQ+NQ+K          
Sbjct: 1   MAVDLMMGYSRTNSFVSKTMEENAVVQEAASGLESVNKLIKLLSQQNQDKLIHQSSSSSS 60

Query: 58  XXXXMDNMDMDCKAVADVAVSKFKKVISLLGRTRTGHARFRRAXXXXXXXXXXXXXXXXX 117
                 ++++DCKAVAD AVSKFKKVISLLGRTRTGHARFRRA                 
Sbjct: 61  PPCSTMDIEIDCKAVADAAVSKFKKVISLLGRTRTGHARFRRA----PVSTPLISTSQDQ 116

Query: 118 XXXXXXQILESKVYYAT-------XXXXXXXXXXXXXXXYFSSVVIPN--DNSNNNGVIS 168
                 QILESKVYYAT                      Y S V++P    N++NNGV +
Sbjct: 117 ENHHQYQILESKVYYATPIQQVPPPPPPPPPPPPPSYHDYSSMVIMPKNNHNNSNNGVTN 176

Query: 169 ERKESSTTIXXXXXXXXXXXXXXXTGDTTDSKQLSSSSAFQI-------AGGKPPIS-SS 220
           +RKESSTTI               TGDT DSK  S SSAFQI       +  KPP+S SS
Sbjct: 177 DRKESSTTINFSYSSAANSFVSSLTGDTNDSKP-SPSSAFQITNLSQVSSAVKPPLSTSS 235

Query: 221 LKRKCSSETL 230
           LKRKCSSE L
Sbjct: 236 LKRKCSSENL 245


>30170.m013832 WRKY transcription factor, putative
          Length = 377

 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 14/110 (12%)

Query: 1   MAVELMMSYRNENFISKMEESVVQEAAS-GLESVNKLIRLLSQKNQ--------EKDQXX 51
           MAVELMM Y  ++F +K++E+ V+EAA+ G++SV ++I+LL Q           E     
Sbjct: 1   MAVELMMGYSGDSFATKLQENAVREAATAGIQSVEEVIKLLQQNQLQQPPQYYSETFSSS 60

Query: 52  XXXXXXXXXXMDNMDMDCKAVADVAVSKFKKVISLLGR-TRTGHARFRRA 100
                      DN+     AV D AV+ FKKVISLLGR TRTGHARFRRA
Sbjct: 61  SNSSDTNPPSTDNI----MAVTDAAVNNFKKVISLLGRTTRTGHARFRRA 106



 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 193 TGDTTDSKQLSSSSAFQIAG-----GKPPISS-SLKRKCSSETLXXXXXXXXXXXXXXXX 246
           TG+T DS Q S SS FQ A      GKPP+SS SLKRKC+S                   
Sbjct: 222 TGET-DSLQRSMSSGFQFANPASSVGKPPLSSTSLKRKCNSMDDAALKCGSSSSRCHCSK 280

Query: 247 XXXXXXXXXXXXPAISLKLADIPPDDY 273
                       PAIS K+ADIPPDD+
Sbjct: 281 KRKSRVKRVIRVPAISNKMADIPPDDF 307


>29848.m004464 WRKY transcription factor, putative
          Length = 321

 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 57/102 (55%), Gaps = 31/102 (30%)

Query: 1   MAVELMMSYRNENFISKMEESV-VQEAAS-GLESVNKLIRLLSQKNQEKDQXXXXXXXXX 58
           MAVELM         +KME+ + +QEAAS GL+S+  LIRL+S K+              
Sbjct: 1   MAVELMS-------FAKMEDQMAIQEAASQGLKSMEHLIRLMSHKSNH------------ 41

Query: 59  XXXMDNMDMDCKAVADVAVSKFKKVISLLGRTRTGHARFRRA 100
                   +DC  + D+ VSKF+KVISLL   RTGHARFRR 
Sbjct: 42  --------VDCTDLTDLTVSKFRKVISLL--NRTGHARFRRG 73