Jatropha Genome Database

JcCB0014511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0014511.20 - phase: 0 /pseudo/partial
         (186 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002421 vesicular-fusion protein nsf, putative                   84   5e-17

>29851.m002421 vesicular-fusion protein nsf, putative
          Length = 701

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 76  QGKKLLVIGTTSEVGFLDSIGICDSFSVTYHVPRLKADDAKKVLKQLNVF 125
           +GKKLLVIGTTSEVGFLDSIG+CD+FSVTY+VP+LK DDAKKV+    +F
Sbjct: 628 KGKKLLVIGTTSEVGFLDSIGLCDAFSVTYNVPKLKKDDAKKVISGATIF 677