Jatropha Genome Database

JcCB0013651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013651.10 - phase: 0 
         (303 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003530 NSFL1 cofactor p47, putative                            472   e-133
29948.m000697 UBX domain-containing protein, putative                 352   1e-97

>29842.m003530 NSFL1 cofactor p47, putative
          Length = 305

 Score =  472 bits (1214), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/305 (80%), Positives = 259/305 (84%), Gaps = 2/305 (0%)

Query: 1   MASRDKKPAKPSSSRTGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPTKG 60
           MAS+DKKP+K SSSR GGIRTLSDLNR +GP       APQEYYTGGEKSGMLVQDP+KG
Sbjct: 1   MASKDKKPSKSSSSRAGGIRTLSDLNRHTGPDSDSDDDAPQEYYTGGEKSGMLVQDPSKG 60

Query: 61  N--DVDAIFNQARQLGAVEGPLDQXXXXXXXXXXXXXXRLLSGETVPSAPQQPEAVIHNI 118
           N  DVDAIFNQARQLGAVEGPLD               RLLSGET+PSAPQQPEAVIHNI
Sbjct: 61  NGNDVDAIFNQARQLGAVEGPLDPLRPSSSSRSFTGTGRLLSGETIPSAPQQPEAVIHNI 120

Query: 119 VFWTNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPEDRRSSVHVNLIRRDEQCPE 178
           VFWTNGFTVNDGPLRRLDDPENA FLESIRKSECPKEL P DRRSSVHVNLIRR+EQCPE
Sbjct: 121 VFWTNGFTVNDGPLRRLDDPENAPFLESIRKSECPKELAPADRRSSVHVNLIRREEQCPE 180

Query: 179 PEKQRHVPFQGVGRTLGSSXXXXXXXXXXXXXLNTAPTPSMGLVVNETLPSTSIQLRLAD 238
           PEKQRHVPFQGVGRTLGSS             +NTAPT SMG+VV+E+LPSTSIQLRLAD
Sbjct: 181 PEKQRHVPFQGVGRTLGSSCTAASEPTANSTPVNTAPTSSMGVVVDESLPSTSIQLRLAD 240

Query: 239 GTRMIAHFNFNHTVNDIRAFINASRPGGAQNYQLQLMGFPPKLLSDPTQTIEEAGLGNSV 298
           GTRMIAHFN++HTVNDIRAFI+ASRPGGAQNYQLQLMGFPPKLL DPTQTIE+AGL NSV
Sbjct: 241 GTRMIAHFNYHHTVNDIRAFIDASRPGGAQNYQLQLMGFPPKLLGDPTQTIEQAGLANSV 300

Query: 299 VIQKF 303
           VIQKF
Sbjct: 301 VIQKF 305


>29948.m000697 UBX domain-containing protein, putative
          Length = 426

 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/313 (61%), Positives = 220/313 (70%), Gaps = 12/313 (3%)

Query: 1   MASRDKKPAKPSSS------RTGGIRTLSDLNR----RSGPXXXXXXXAPQEYYTGGEKS 50
           + SR KKPAK ++S      R GG+RTL+DLN     RS          P+EYYTGG+KS
Sbjct: 116 LRSRRKKPAKSAASAGGSKTRRGGVRTLADLNHAPDARSASDDDDDDYEPEEYYTGGQKS 175

Query: 51  GMLVQDPTKGNDVDAIFNQARQLGAVEGPLDQXXXXXXXXXXXXXXRLLSGETVPSAPQQ 110
           GMLVQDPTK  D DAIF+QAR LG VE P+D               RLLSGETVPSAPQ 
Sbjct: 176 GMLVQDPTKPYDADAIFDQARHLG-VERPVDNLHSSSSSRSFTGTGRLLSGETVPSAPQP 234

Query: 111 PEAVIHNIVFWTNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPEDRRSSVHVNLI 170
            +AV HN+ FW NGFTVNDGPLRR DDP NA+FLESI+KSECP EL+P D RS VH++L+
Sbjct: 235 SQAVNHNVTFWRNGFTVNDGPLRRFDDPSNAAFLESIKKSECPFELQPADGRSQVHLDLM 294

Query: 171 RRDEQCPEPEKQRHVPFQGVGRTLGSSXXXXXXXXXXXXXLNTAPTPSMGLVVNETLPST 230
           RR+E   EP K+R   FQGVGRTLGSS             L T P PS+GLVV+ +LP+T
Sbjct: 295 RREENYYEP-KKRQTSFQGVGRTLGSSSGTATDPASPTVSLKTPPLPSVGLVVDSSLPTT 353

Query: 231 SIQLRLADGTRMIAHFNFNHTVNDIRAFINASRPGGAQNYQLQLMGFPPKLLSDPTQTIE 290
           SIQLRLADGTRM++ FN +HT+ DIR FI ASRPGG +NYQLQ MGFPPK L DP QTIE
Sbjct: 354 SIQLRLADGTRMVSRFNLHHTIRDIRDFIEASRPGGERNYQLQTMGFPPKQLIDPEQTIE 413

Query: 291 EAGLGNSVVIQKF 303
            AG+ NSVVIQKF
Sbjct: 414 AAGIANSVVIQKF 426