Jatropha Genome Database

JcCB0013521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013521.10 - phase: 0 
         (165 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29852.m002017 conserved hypothetical protein                          233   4e-62

>29852.m002017 conserved hypothetical protein
          Length = 162

 Score =  233 bits (593), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 119/155 (76%), Positives = 130/155 (83%)

Query: 11  SSSMDPIFHIVKIVPYXXXXXXXXXXXXXXXXXXXXMTVFALVLLTYFMVVSGIVYDVIV 70
           +S +DPIFHI+KI+PY                     TVFA VLLTYFMVVSGIVYDVIV
Sbjct: 8   TSPVDPIFHILKIIPYSILRPPRLRLKLPTFTLPSPSTVFAFVLLTYFMVVSGIVYDVIV 67

Query: 71  EPPGIGSTQDPATGSIRPVVFLPGRVNGQYIIEGLSSGFMFVLGGTGIVLMDLALDKNRA 130
           EPPGIGSTQDP+TGS+RPVVFL GRVNGQYIIEGLSSGFMF+LGGTGI+LMDLALDKNRA
Sbjct: 68  EPPGIGSTQDPSTGSVRPVVFLSGRVNGQYIIEGLSSGFMFLLGGTGIMLMDLALDKNRA 127

Query: 131 KSVKVSYATAGISSLIIAYVMSMLFIRIKIPGYLR 165
           KSVKVSYA+AGISS++IAYVMSMLFIRIKIP YLR
Sbjct: 128 KSVKVSYASAGISSIVIAYVMSMLFIRIKIPAYLR 162