Jatropha Genome Database

JcCB0013291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013291.10 + phase: 0 
         (111 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003303 conserved hypothetical protein                          180   2e-46

>29889.m003303 conserved hypothetical protein
          Length = 111

 Score =  180 bits (456), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/111 (85%), Positives = 96/111 (86%)

Query: 1   MEGADEGGIERVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQXXXXXXXXXXXXDWNAM 60
           ME  DEGGIERVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQ            D NAM
Sbjct: 1   MEVTDEGGIERVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRNAM 60

Query: 61  RMREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIQHLLR 111
           R+REKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIQHLLR
Sbjct: 61  RLREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIQHLLR 111