Jatropha Genome Database

JcCB0013151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013151.20 - phase: 0 
         (221 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007102 conserved hypothetical protein                          222   1e-58
29279.m000131 transcription factor, putative                          173   6e-44
30170.m014124 transcription factor, putative                          159   7e-40
27742.m000246 transcription factor, putative                          126   1e-29
30131.m007187 transcription factor, putative                          105   2e-23

>30131.m007102 conserved hypothetical protein
          Length = 199

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 140/224 (62%), Gaps = 31/224 (13%)

Query: 1   MMRQGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSN 60
           MMRQGGL GGSRCQDCGNQAKK+CV+MRCRTCCKSKGF CQTHVKSTW+PAYRR+ R  N
Sbjct: 2   MMRQGGL-GGSRCQDCGNQAKKDCVYMRCRTCCKSKGFHCQTHVKSTWVPAYRRQQRLQN 60

Query: 61  IAVQQQNPHQQPRTNSNPKRLRLSPLTGLEVGNFPAEVNSIATFRCFRMSSIDEEGDYQL 120
           ++  Q           NPKRLR +P T     NFPAEVNS+ATFRC R+SSID EGD Q 
Sbjct: 61  VSSIQLQQQHPQDQLHNPKRLRENPAT----ENFPAEVNSLATFRCLRVSSID-EGDDQF 115

Query: 121 AYQTSVGIGGHVFQGILYDQGPHQ---ESFSTQLLQDTXXXXXXXXXXXXXXXXXXXXXX 177
           AYQTS+ IGGHVF+GILYDQGP     ES +TQ+ +                        
Sbjct: 116 AYQTSMSIGGHVFKGILYDQGPTYTIGESSTTQIQEPN---------------------L 154

Query: 178 XXXXXXXXXXXXXXXXVGAEH-SSSYPFPLNAFTSGTQLFLHPK 220
                           V A+    SYPFP NAF SGTQLFLHPK
Sbjct: 155 ANAAALTSTTLAPTSSVDADSLPPSYPFPFNAFMSGTQLFLHPK 198


>29279.m000131 transcription factor, putative
          Length = 350

 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 122/231 (52%), Gaps = 24/231 (10%)

Query: 13  CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLR----PSNIAVQQQNP 68
           CQDCGNQAKK+CVHMRCRTCCKS+GF+CQTHVKSTW+PA +RR R     +    Q Q  
Sbjct: 120 CQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLVAIQQQQHQQQ 179

Query: 69  HQQPRTNSNPKRLRLSPL------------------TGLEVGNFPAEVNSIATFRCFRMS 110
            QQ +   NPKRLR +P                   +GLE+GNFP+EV+S A FRC ++S
Sbjct: 180 QQQQQQQQNPKRLRENPTSSSLACTPATNTRLPNNSSGLELGNFPSEVSSPAVFRCVKVS 239

Query: 111 SIDEEGDYQLAYQTSVGIGGHVFQGILYDQGPHQESFSTQLLQDTXXXXXXXXXXXXXXX 170
            IDE  D Q AYQT+V IGGHVF+GILYD GP                            
Sbjct: 240 GIDENDD-QYAYQTAVNIGGHVFKGILYDHGPESTYMPAAETSSGGGSGGGLQPLNLITA 298

Query: 171 XXXXXXXXXXXXXXXXXXXXXXXVG-AEHSSSYPFPLNAFTSGTQLFLHPK 220
                                  VG  + SS YP PLN F +GTQ F +P+
Sbjct: 299 TASAAISPGGGGGGVTSASSGAAVGFLDPSSLYPTPLNTFMAGTQFFPNPR 349


>30170.m014124 transcription factor, putative
          Length = 311

 Score =  159 bits (403), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 87/164 (53%), Positives = 103/164 (62%), Gaps = 24/164 (14%)

Query: 1   MMRQGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLR--- 57
           +MRQ GL GG  CQDCGNQAKK+C H+RCRTCCKS+GF CQTHVKSTW+PA +RR R   
Sbjct: 81  VMRQSGLGGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFLCQTHVKSTWVPAAKRRERQQQ 140

Query: 58  ----------------PSNIAVQQQNPHQQPRTNSNPKRL---RLSPLT-GLEVGNFPAE 97
                                 + +NP +Q         L   RL+  T GLEV +FP E
Sbjct: 141 LSALQQQQQQHQHQQNQEQNQFRGENPKRQRENQGGVPSLACTRLATTTSGLEVSHFPPE 200

Query: 98  VNSIATFRCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQG 141
           VNS A FRC R+S + E+ D Q AYQT+V IGGHVF+GILYDQG
Sbjct: 201 VNSPAVFRCVRVSPM-EDTDEQYAYQTAVNIGGHVFKGILYDQG 243


>27742.m000246 transcription factor, putative
          Length = 344

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 94/169 (55%), Gaps = 33/169 (19%)

Query: 5   GGLLG------GSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRP 58
           GG++G      G+ CQDCGNQAKK+C H RCRTCCKS+G++C THVKSTW+PA RRR R 
Sbjct: 116 GGVVGANSASSGTSCQDCGNQAKKDCTHRRCRTCCKSRGYDCATHVKSTWVPAARRRERQ 175

Query: 59  SNIAVQQQNPHQQPRTNSNPKRLRL----------------SPLTGLEVGN--------- 93
             ++           + S  K+ RL                +P    +  +         
Sbjct: 176 LMVSTAIGGGTGSSVSTSGVKKPRLLNSQTTTTSHTSTSNTTPPRSFDTSSSHQDVSFKE 235

Query: 94  -FPAEVNSIATFRCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQG 141
             P +V + A F+C R++++D +G+ + AYQ  V IGGHVF+G LYDQG
Sbjct: 236 ALPGQVRAPAVFKCVRVTAMD-DGEDEYAYQAVVKIGGHVFKGFLYDQG 283


>30131.m007187 transcription factor, putative
          Length = 280

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 28/162 (17%)

Query: 13  CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLR----------PSNIA 62
           C+DCGN+AKKEC   RCRTCCKS+G++C THVKSTW+ A RRR R           S  +
Sbjct: 80  CRDCGNRAKKECEFRRCRTCCKSRGYDCATHVKSTWVSAARRRERHGGDGGGGGGSSGSS 139

Query: 63  VQQQNPHQQPRTNSNPKRLRLSPLTGLEVGNF-----------------PAEVNSIATFR 105
                  ++PR N       LS        +F                 P++V + A FR
Sbjct: 140 SGGGGGTKRPRENVTATSNSLSTSNNNVAASFSFDTGSNYQDASFKQCLPSQVRAPAVFR 199

Query: 106 CFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQGPHQESF 147
           C R+++I+  G+ ++ YQ  V I GH+F+G LYDQG  +++ 
Sbjct: 200 CIRVTAIN-GGEPEVGYQAMVNISGHLFKGFLYDQGIDKKNL 240