Jatropha Genome Database

JcCB0013151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013151.10 - phase: 1 /partial
         (288 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007101 DNA replication licensing factor MCM4, putative         357   5e-99
27967.m000046 minichromosome maintenance protein, putative             67   7e-12
30128.m008586 DNA replication licensing factor MCM2, putative          52   3e-07

>30131.m007101 DNA replication licensing factor MCM4, putative
          Length = 867

 Score =  357 bits (915), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 181/279 (64%), Positives = 201/279 (72%), Gaps = 7/279 (2%)

Query: 12  IGNTFSSPAADXXXXXXXXXXXXXXXXXXXXXXXQSRFATSESTPTTHXXXXXXXXXXXX 71
           IGNTFSSPA                         QSRF  SESTPT              
Sbjct: 21  IGNTFSSPAT----RGNTRRSRSSASAYATPPPPQSRFPASESTPTPRRSNGHHAATSTP 76

Query: 72  XXXXXXXXXXXXXXXDYMDEATPTFVWGTNISVEDVKERFQMFLKHYRD--NSQSLSNEI 129
                          D M++ATPTFVWGTNISV+DVK + QMFLKH+RD   SQS   E+
Sbjct: 77  SSMSEGVPPSSEGGDD-MEDATPTFVWGTNISVQDVKGKIQMFLKHFRDLNKSQSQGAEV 135

Query: 130 FEEGKYVKAIRKVLEVEGEGLDVDAHDVFDYDSDLYAKMVRYPLEVLAIFDIVLMDFVGL 189
           FEEGKY+K I +VLE+EGE LDVD HDVFDYDSDLY KMVRYPLEVLAIFDIVLMD V L
Sbjct: 136 FEEGKYMKGINRVLEIEGEWLDVDGHDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSL 195

Query: 190 MDPLFEKHVQVRIYNLKTSTTMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVC 249
           ++PLF+KHVQVRI+ LKTSTTMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVC
Sbjct: 196 INPLFDKHVQVRIFYLKTSTTMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVC 255

Query: 250 GNVAGPFLVERGRINEPTVCLKQECLAKNSMTLVHNRCR 288
           G ++ P +V+RGRINEPT C K+ECLA+NSMTL+HNRCR
Sbjct: 256 GYLSDPIVVDRGRINEPTNCSKEECLARNSMTLLHNRCR 294


>27967.m000046 minichromosome maintenance protein, putative
          Length = 713

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 13/182 (7%)

Query: 100 TNISVEDVKERFQMFLKHYR-DNSQSLSNEIFEEGKYVKAIRKVLEVEGEGLDVDAHDVF 158
           T++  E V+  F  FLK YR D   S+      E  Y   I  +   E   + +D   V 
Sbjct: 9   TDVKAERVENIFLEFLKSYRFDVKNSMG-----EDSYEAQIETMKVNESTTMFIDFSHVM 63

Query: 159 DYDSDLYAKMVRYPLEVLAIFDIVLMDFVGLMDPLF------EKHVQVRIYNLKTSTTMR 212
            ++  L   +    L            FV  M+P F       K + V  YN+  S  +R
Sbjct: 64  RFNDLLQKAIADEYLRFEPYLKNACKRFVMEMNPTFISDDNPNKDINVAFYNIPFSKRLR 123

Query: 213 NLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGNVAGPFLVERGRINEPTVCLKQ 272
            L  ++I K+VS+ G++ R S + PE+ +  FRCL CG V    + ++ +  EPT+C+  
Sbjct: 124 ELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFRCLDCGGVI-KNVEQQFKYTEPTICVNA 182

Query: 273 EC 274
            C
Sbjct: 183 TC 184


>30128.m008586 DNA replication licensing factor MCM2, putative
          Length = 930

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 134 KYVKAIRKVLEVEGEGLDVDAHDVFDYDSDLYAKMVRYPLEVLAIFDIVLMDFVGLMDPL 193
           +YV+ I +++      L++D         ++   +   P  VL + + V    V  + P 
Sbjct: 234 EYVRLINEMVSANKCSLEIDYKQFIFVHPNIAIWLADAPQSVLEVMEDVAASVVFSLHPN 293

Query: 194 FE---KHVQVRIYNLKTSTTMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCG 250
           ++   + + VRI +L     +RN+    +  M+ + G++ R S + P++++  + C  CG
Sbjct: 294 YKNIHQKIYVRITSLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCG 353

Query: 251 NVAGPFLVERGRINEPTVCLKQECLAKNSMTL 282
            + GPF   +   +E  V    EC +K   T+
Sbjct: 354 AILGPFF--QSSYSEVKVGSCPECQSKGPFTV 383