Jatropha Genome Database

JcCB0012961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012961.30 - phase: 0 /pseudo/partial
         (99 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30205.m001615 serine/threonine kinase, putative                        47   2e-06
30066.m000741 receptor serine/threonine kinase, putative               47   2e-06
30066.m000743 receptor serine/threonine kinase, putative               47   2e-06
29747.m001096 receptor serine/threonine kinase, putative               47   2e-06

>30205.m001615 serine/threonine kinase, putative
          Length = 638

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/23 (86%), Positives = 22/23 (95%)

Query: 27  FINEVASISRTSHVNIVTLSGFC 49
           FINEVASISRTSH+N+VTL GFC
Sbjct: 367 FINEVASISRTSHINVVTLLGFC 389


>30066.m000741 receptor serine/threonine kinase, putative
          Length = 435

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 24/31 (77%)

Query: 27  FINEVASISRTSHVNIVTLSGFCSRVLKEHL 57
           FINEVASISRTSHVN+VTL GFC    K  L
Sbjct: 133 FINEVASISRTSHVNVVTLLGFCYEGCKRAL 163


>30066.m000743 receptor serine/threonine kinase, putative
          Length = 405

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 24/31 (77%)

Query: 27  FINEVASISRTSHVNIVTLSGFCSRVLKEHL 57
           FINEVASISRTSHVN+VTL GFC    K  L
Sbjct: 128 FINEVASISRTSHVNVVTLLGFCYEGCKRAL 158


>29747.m001096 receptor serine/threonine kinase, putative
          Length = 224

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 24/31 (77%)

Query: 27 FINEVASISRTSHVNIVTLSGFCSRVLKEHL 57
          F+NEVASISRTSHVNIVTL GFC    K  L
Sbjct: 56 FVNEVASISRTSHVNIVTLLGFCYEGSKRAL 86