Jatropha Genome Database

JcCB0012061.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012061.30 - phase: 2 /partial
         (134 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014200 endoplasmin, putative                                    84   2e-17
30169.m006555 pentatricopeptide repeat-containing protein, putative    52   8e-08

>30170.m014200 endoplasmin, putative
          Length = 816

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 2   VDNDPDEATDNDMKGIEDAYVDKKKGEYAKFWNELGESIKLNIMEDATNRNILAKFLKFE 61
            D DPDE  + D K +ED+  D+KKG+YAKFWNE G+SIKL I+EDATNRN LAK L+FE
Sbjct: 487 ADEDPDEMKE-DKKDVEDSGDDEKKGQYAKFWNEFGKSIKLGIIEDATNRNRLAKLLRFE 545

Query: 62  RIKSDA 67
             KSD 
Sbjct: 546 STKSDG 551


>30169.m006555 pentatricopeptide repeat-containing protein, putative
          Length = 660

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 30/41 (73%)

Query: 66  DAMAVLKKMLNSGWSPDSIFFLSILAACSHAKFLDVLRLAF 106
           DA+AV  +M NSG +PDSI F+S+LAACSHA  LD  R  F
Sbjct: 373 DAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYF 413