Jatropha Genome Database

JcCB0011781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011781.10 - phase: 0 
         (261 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006006 Endoplasmic reticulum-Golgi intermediate compartme...   532   e-152
28515.m000316 Endoplasmic reticulum-Golgi intermediate compartme...   356   5e-99
29867.m000424 Endoplasmic reticulum-Golgi intermediate compartme...   156   8e-39
28166.m001091 thioredoxin domain-containingprotein, putative           94   6e-20

>29908.m006006 Endoplasmic reticulum-Golgi intermediate compartment
           protein, putative
          Length = 386

 Score =  532 bits (1370), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 249/259 (96%), Positives = 257/259 (99%)

Query: 3   IDKPLQRHGGRLEHNETYCGSCYGAEASDEDCCNNCEEVREAYRKKGWALSNPDLIDQCK 62
           I+ PLQRHGGRLEHNETYCGSCYGAEASDEDCCN+CE+VREAYRKKGWALSNPDLIDQCK
Sbjct: 128 IENPLQRHGGRLEHNETYCGSCYGAEASDEDCCNSCEDVREAYRKKGWALSNPDLIDQCK 187

Query: 63  REGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNIS 122
           REGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNIS
Sbjct: 188 REGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNIS 247

Query: 123 HKINRLTFGEYFPGVVNPLDGVHWTQETPSGMYQYFLKVVPTVYTDVSGHTIQSNQFSVT 182
           HKINRL FG+YFPGVVNPLDGVHWTQETPSGMYQYF+KVVPTVYTDVSG+TIQSNQFSVT
Sbjct: 248 HKINRLAFGDYFPGVVNPLDGVHWTQETPSGMYQYFIKVVPTVYTDVSGYTIQSNQFSVT 307

Query: 183 EHFRSAEAGRLQALPGVFFFYDLSPIKVTFTEQHVSFLHFLTNVCAIVGGVFTVSGILDS 242
           EHFRSAEAGRLQ+LPGVFFFYDLSPIKVTFTE+HVSFLHFLTNVCAIVGGVFTVSGILDS
Sbjct: 308 EHFRSAEAGRLQSLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDS 367

Query: 243 FIYHGQKAIKKKMEIGKFS 261
           FIYHGQKAIKKKMEIGKFS
Sbjct: 368 FIYHGQKAIKKKMEIGKFS 386


>28515.m000316 Endoplasmic reticulum-Golgi intermediate compartment
           protein, putative
          Length = 265

 Score =  356 bits (914), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 160/208 (76%), Positives = 183/208 (87%)

Query: 3   IDKPLQRHGGRLEHNETYCGSCYGAEASDEDCCNNCEEVREAYRKKGWALSNPDLIDQCK 62
           I+KPLQRHGGRLEHNETYCGSCYGAE SD+DCCN+C+EVREAYRKKGWAL+  DLIDQCK
Sbjct: 39  IEKPLQRHGGRLEHNETYCGSCYGAEMSDDDCCNSCDEVREAYRKKGWALTGVDLIDQCK 98

Query: 63  REGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNIS 122
           REGF+Q++KDEEGEGCNIYG LEVNKVAGNFHF+PGK   QS+  + DLL FQ DS+NIS
Sbjct: 99  REGFIQKVKDEEGEGCNIYGSLEVNKVAGNFHFSPGKGLHQSSFFIQDLLVFQGDSYNIS 158

Query: 123 HKINRLTFGEYFPGVVNPLDGVHWTQETPSGMYQYFLKVVPTVYTDVSGHTIQSNQFSVT 182
           H INRL FG+YFPGVVNPLDGV W  ETP+GM+QYFLKVVPT+YTD+ G T++SNQ+SVT
Sbjct: 159 HTINRLAFGDYFPGVVNPLDGVPWVHETPNGMHQYFLKVVPTIYTDIRGRTVRSNQYSVT 218

Query: 183 EHFRSAEAGRLQALPGVFFFYDLSPIKV 210
           EHF+ +E  RL + PGVFFFYD SPIKV
Sbjct: 219 EHFKKSEFARLDSPPGVFFFYDFSPIKV 246


>29867.m000424 Endoplasmic reticulum-Golgi intermediate compartment
           protein, putative
          Length = 191

 Score =  156 bits (395), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 113/179 (63%), Gaps = 5/179 (2%)

Query: 75  GEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNISHKINRLTFGEYF 134
           GEGC +YG L+V +VAGNFH     S    N+ V  ++       N+SH I+ L+FG  F
Sbjct: 12  GEGCRVYGVLDVQRVAGNFHI----SVHGLNIFVAQMIFDGAIHVNVSHIIHDLSFGPKF 67

Query: 135 PGVVNPLDGVHWTQETPSGMYQYFLKVVPTVYTDVSGHTIQSNQFSVTEHFRSAEAGRLQ 194
           PG+ NPLDG        SG ++Y++K+VPT Y  +S   + +NQFSVTE+F S  +   +
Sbjct: 68  PGLHNPLDGTARILHDASGTFKYYIKIVPTEYRYISKEVLPTNQFSVTEYF-SPMSEYDR 126

Query: 195 ALPGVFFFYDLSPIKVTFTEQHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKAIKK 253
             P V+F YDLSPI VT  E+  SFLHF+T +CA++GG F ++G+LD ++Y   +A+ K
Sbjct: 127 TWPAVYFLYDLSPITVTIKEERRSFLHFITRLCAVLGGTFALTGMLDRWMYRLLEAVTK 185


>28166.m001091 thioredoxin domain-containingprotein, putative
          Length = 478

 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 119/241 (49%), Gaps = 40/241 (16%)

Query: 43  EAYRKKGWALSNPDLIDQCKREGFLQRIKDEE--GEGCNIYGFLEVNKVAGNFHFAPGKS 100
           E+  K   +L  P  ++  K E   Q  K       GC I G++ V KV GN   +    
Sbjct: 252 ESLVKTMESLVAPIQLESLKSENATQSTKRPAPLTGGCRIEGYVRVKKVPGNLIIS---- 307

Query: 101 FQQSNVHVHDLLAFQKDSFNISHKINRLTFG---------------EYFPGVVNPLDG-- 143
             +S  H     +F     N+SH I+ L+FG                Y  G  + L+G  
Sbjct: 308 -ARSGAH-----SFDPSQMNMSHVISHLSFGLKVSPKVMNEAKRLVPYIGGSHDKLNGRS 361

Query: 144 -VHWTQETPSGMYQYFLKVVPT-VYTDVSGHTIQSNQFSVTEHFR-SAEAGRLQA--LPG 198
            V+      +   +++L++V T V T  S     S +  + E +  +A +  +Q+  +P 
Sbjct: 362 FVNHRDVDANVTIEHYLQIVKTEVVTRRS-----SREHKLLEEYEYTAHSSLVQSVYIPA 416

Query: 199 VFFFYDLSPIKVTFTEQHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKAIKKKMEIG 258
             F ++LSP++V  TE   SF HF+TNVCAI+GGVFTV+GILDS ++H  + + KK+E+G
Sbjct: 417 AKFHFELSPMQVLITENPKSFSHFITNVCAIIGGVFTVAGILDSILHHTVR-LMKKVELG 475

Query: 259 K 259
           K
Sbjct: 476 K 476