Jatropha Genome Database

JcCB0011561.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011561.50 - phase: 0 /partial/short
         (48 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007163 Transcription factor HBP-1b(c1), putative                68   9e-13
28883.m000741 Transcription factor HBP-1b(c1), putative                55   8e-09
29908.m005962 Transcription factor TGA7, putative                      49   4e-07
30055.m001550 DNA binding protein, putative                            46   3e-06

>30131.m007163 Transcription factor HBP-1b(c1), putative
          Length = 463

 Score = 68.2 bits (165), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 32
           ADNLRQQTLQQMHRILTTRQSARALLAIHDYF
Sbjct: 416 ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 447


>28883.m000741 Transcription factor HBP-1b(c1), putative
          Length = 476

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/31 (87%), Positives = 29/31 (93%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDY 31
           AD LRQQTLQQMHRILTTRQ+ARALL I+DY
Sbjct: 429 ADLLRQQTLQQMHRILTTRQAARALLVINDY 459


>29908.m005962 Transcription factor TGA7, putative
          Length = 361

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 28/32 (87%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 32
           AD+LRQQTLQ + RILTTRQ+AR LLA+ +YF
Sbjct: 312 ADHLRQQTLQHLSRILTTRQAARGLLALGEYF 343


>30055.m001550 DNA binding protein, putative
          Length = 443

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 24/32 (75%)

Query: 1   ADNLRQQTLQQMHRILTTRQSARALLAIHDYF 32
           ADNLRQQTL Q+ RILT RQ AR  L I +Y+
Sbjct: 368 ADNLRQQTLHQLRRILTVRQGARCFLVIGEYY 399