Jatropha Genome Database

JcCB0011561.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011561.40 + phase: 0 
         (132 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007162 NADH dehydrogenase, putative                            236   2e-63

>30131.m007162 NADH dehydrogenase, putative
          Length = 132

 Score =  236 bits (603), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/132 (84%), Positives = 121/132 (91%)

Query: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60
           M+F  RS+KV PNS SLEEAR RVFDFFR ACRSIP +MDIYNLQDVVT S+LRSSIASQ
Sbjct: 1   MSFISRSVKVAPNSRSLEEARGRVFDFFRLACRSIPKVMDIYNLQDVVTKSQLRSSIASQ 60

Query: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMS 120
           IR NS+V+NPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVG+ GLVQDLD+KDQ MS
Sbjct: 61  IRINSHVSNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGEQGLVQDLDTKDQAMS 120

Query: 121 DFLKNFYKSNYY 132
           DFLKNFYKSNY+
Sbjct: 121 DFLKNFYKSNYF 132