Jatropha Genome Database

JcCB0011381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011381.10 + phase: 2 /pseudo/partial
         (137 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30075.m001157 ATP binding protein, putative                            69   5e-13

>30075.m001157 ATP binding protein, putative
          Length = 1548

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 3/64 (4%)

Query: 56   LKYKLSGFLRWDTTAKLSLPVQIAAITS---LLPFDFEDIIKSNLNLPEYASQSVFTDLI 112
            LK KL GFL  +TT++ SLPVQIA +TS   LL  DF+D+++S+L LP+ ASQSV+ DL+
Sbjct: 1462 LKSKLFGFLWQNTTSRSSLPVQIATVTSILGLLRLDFKDVVQSDLKLPKVASQSVYIDLL 1521

Query: 113  RNXF 116
            R  F
Sbjct: 1522 RKWF 1525