Jatropha Genome Database

JcCB0011311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011311.10 + phase: 0 /pseudo/partial
         (475 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010889 coatomer gamma subunit, putative                        853   0.0  

>30190.m010889 coatomer gamma subunit, putative
          Length = 887

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/454 (90%), Positives = 428/454 (94%)

Query: 22  PEAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVR 81
           P+AKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVR
Sbjct: 434 PDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVR 493

Query: 82  AAAVSTLAQFGALVDTLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGEVVETDKDV 141
           AAAVSTLA+FGALVD LKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGE+VETDK+V
Sbjct: 494 AAAVSTLAKFGALVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGEIVETDKNV 553

Query: 142 QAFLFGPLDIPLFNLETSLKNYEPSEEPFDIHSVPKEVKSQPLAEKKAPGKKPTGLGSPP 201
           Q FLFGPLDIPL NLETSLK YEPSEEPFD +SVP+EVKSQPLAEKKAPGKKPTGLG+PP
Sbjct: 554 QDFLFGPLDIPLVNLETSLKKYEPSEEPFDFNSVPREVKSQPLAEKKAPGKKPTGLGAPP 613

Query: 202 AGPPSTVDAYEKLISSIPEFSNFGKLFKSSAPVELTEAETEYAVNAVKHIFDGHVVFQYN 261
            GPPSTVDAYE+L+SSIPEFSNFGKLFKSSAPVELTEAETEYAVN VKHIFDGHVVFQYN
Sbjct: 614 TGPPSTVDAYERLLSSIPEFSNFGKLFKSSAPVELTEAETEYAVNVVKHIFDGHVVFQYN 673

Query: 262 CTNTIPEQLLENVMVIVDXXXXXXXXXXXXKPLRSLPYDSPGQTFVAFEKPEGVPAVGKF 321
           CTNT+PEQLLENV V+VD            KPLRSLPYDSPGQTFVAFEK EGVPAVGKF
Sbjct: 674 CTNTVPEQLLENVTVVVDASEAEDFAEVASKPLRSLPYDSPGQTFVAFEKLEGVPAVGKF 733

Query: 322 SNMLRFIVKEVDPTTGEADEDGVEDEYQLEELEVVAADYMMKVGVSNFRNAWESMGPDCE 381
           SNMLRFIVKEVD TTGEA+EDGVEDEYQLE+LEVVAADYMMKVGVSNFRNAWESMGPDCE
Sbjct: 734 SNMLRFIVKEVDQTTGEAEEDGVEDEYQLEDLEVVAADYMMKVGVSNFRNAWESMGPDCE 793

Query: 382 RVDEYGLGPRESLSEAVSAVINLLGMQPCEGTEVVASNSRSHTCLLSGVFIGNVRVLVRL 441
            VDEYGLG RESL+EAVSAVINLLGMQPCEGTEVV SNSRSHTC+LSGVFIGNV+VLV+L
Sbjct: 794 CVDEYGLGARESLAEAVSAVINLLGMQPCEGTEVVPSNSRSHTCVLSGVFIGNVKVLVQL 853

Query: 442 QFGIDGARDVAMKLAVRSEDESVSDAIHEIVASG 475
           QFGIDG ++VAMKLAVRSEDESVSDAIHEIVASG
Sbjct: 854 QFGIDGPKEVAMKLAVRSEDESVSDAIHEIVASG 887